BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH12FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig964 603 e-172
3x_Contig205 394 e-109
>3x_Contig964
Length = 3868
Score = 603 bits (304), Expect = e-172
Identities = 350/364 (96%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 342 tatcctgcatcctgtacgctacattagataatcaaattgaaccggtcgaaaaggcttcct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tatcctgcatcctgtacgctacattagataatcaaattgaaccggtcgaaaaggcttcct 71
Query: 402 tccatactttaacccaataatgagagttatccgtcaattacacacttctaaaagattgtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tccatactttaacccaataatgagagttatccgtcaattacacacttctaaaagattgtt 131
Query: 462 gcaatctttattcgataaacaaaaataccaggcaaccacttatgccagacctaatcattt 521
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gcaatctttagtcgataaacaaaaataccaggcaaccacttatgccagacctaatcattt 191
Query: 522 ggttctgactagaggtaagaacgccattctttatgatgatgttaacaattaagaatatat 581
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 192 ggttctgactagaggtaagaacgccattctttatgatgatgttaacaataaagaatatat 251
Query: 582 tgatttcactgctggtatcgcattaactgctttgggacatgccaattccggagtggctga 641
|||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||
Sbjct: 252 tgatttcactgctggtatcgcagtaactgctttgggacatgccaatccggaagtggctga 311
Query: 642 aatcatgttcaaaccaagtaagaaactgatgcattctttctaacttgtcctttaatgaag 701
||||||| ||||| ||||||||||||||| ||||| ||||||||||| || |||||| |
Sbjct: 312 gatcatgtacaaacaaagtaagaaactgatccattc-ttctaacttgtactataatgagg 370
Query: 702 aatg 705
||||
Sbjct: 371 aatg 374
>3x_Contig205
Length = 1544
Score = 394 bits (199), Expect = e-109
Identities = 212/215 (98%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 88 catcgctcattgttcctggttttcacctctgattcatatcttcaggactctattgtattg 147
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1330 catcgctcattgttcctggttttcacctctgattcatatcttcaggcctctattgtattg 1389
Query: 148 ttctttctcactcattatgtgcatctatgccgttagctgtttttttctttatatatactg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ttctttctcactcattatgtgcatctatgccgttagctgtttttttctttatatatactg 1449
Query: 208 caatgtgaagtatttccatttaagaagtttcttcaaaaatctcatcgctaaccatatcac 267
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1450 caatgtgaagtatttccatttaggaagtttcttcaaaaatctcatcgctaaccatatcac 1509
Query: 268 ttaa-cggtaagttgatctgaatagataataaagg 301
|||| ||||||||||||||||||||||||||||||
Sbjct: 1510 ttaaccggtaagttgatctgaatagataataaagg 1544
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,062
Number of Sequences: 1807
Number of extensions: 10062
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)