BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH12RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 1078 0.0
>3x_Contig1467
Length = 7717
Score = 1078 bits (544), Expect = 0.0
Identities = 682/715 (95%), Gaps = 11/715 (1%)
Strand = Plus / Minus
Query: 48 tcaagcttgtcaaggatattgaatgcggctccaagacagtaaaaagtagatgccgcttgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5753 tcaagcttgtcaaggatattgaatgcggctccaagacagtaaaaagtagatgccgcttgt 5694
Query: 108 tgagtactgatgtttactggcttaagtaaaacaacgtcaacctttggatcaaccaaaatg 167
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5693 tgagtactgatgtttactggcttaggtaaaacaacgtcaacctttggatcaaccaaaatg 5634
Query: 168 gtagattcacaagttcctttacctaaatttggatgccaaaaagtaccgcaaacttcatca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633 gtagattcacaagttcctttacctaaatttggatgccaaaaagtaccgcaaacttcatca 5574
Query: 228 ccgacactccacgtatctgccaaatttgagcctacttctgagatttttccataatactct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5573 ccgacactccacgtatctgccaaatttgagcctacttctgagatttttccataatactct 5514
Query: 288 cttccaatgccaacttcatagttcatatgcctagtgtaactattgaatatctttaaatca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5513 cttccaatgccaacttcatagttcatatgcctagtgtaactattgaatatctttaaatca 5454
Query: 348 actgggtttaaaccgacatattccacttgcacggaaatgacatctttagatattggagtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5453 actgggtttaaaccgacatattccacttgcacggaaatgacatctttagatattggagtc 5394
Query: 408 tttatctttgtttcataggagaactgaggaggatgatttttggaatagaatattagcgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5393 tttatctttgtttcataggagaactgaggaggatgatttttggaatagaatattagcgat 5334
Query: 468 ttaaccggcacataatggatatgtcttatcagcctatcgactcttttcattctct-aagg 526
|||||||||||||||||||||||||||| | ||||| |||||||||||| ||||| ||||
Sbjct: 5333 ttaaccggcacataatggatatgtcttagcggcctagcgactcttttca-tctctaaagg 5275
Query: 527 agaagccaattccctaaggtttggtgattcatgattatattttaccacatatgccatctt 586
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||
Sbjct: 5274 ggaagccaattccctagggtttggtgaatcatgattatatttcaccacatatgccaactt 5215
Query: 587 cggatcgtgtttattt-acaattctt-cgccatggtaaaaga-ttacagcagtttg-att 642
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||| || |||
Sbjct: 5214 cggatcgtgtttatttaacaattcttccgccatggtaaaagagttacagcagtatgaatt 5155
Query: 643 tatccagaaaggctt-aagt-gtaagcattcttgtgttaagggtcatgttaccggaattt 700
||||||||||||||| |||| |||||||| |||||||||||||||||| || ||||| |
Sbjct: 5154 tatccagaaaggcttgaagtggtaagcatccttgtgttaagggtcatggtagcggaagtc 5095
Query: 701 tg-gtaaactccg--tcttattctttttaatgaacctttttttaaaggaatttta 752
|| |||||||||| ||| |||||||| | ||| ||||||||||| ||| ||||
Sbjct: 5094 tgtgtaaactccggttctaattcttttaattgacgctttttttaaatgaaattta 5040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8060
Number of Sequences: 1807
Number of extensions: 8060
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)