BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA01FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig289 983 0.0
>3x_Contig289
Length = 1053
Score = 983 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Minus
Query: 86 acacccactggcacgtagaactggtaagatgatctggtcgctattcatcgatgaatatgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acacccactggcacgtagaactggtaagatgatctggtcgctattcatcgatgaatatgg 447
Query: 146 atgccagatatgttccttgtcaaaacctaacaaggctttagtatcattctcacattcatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgccagatatgttccttgtcaaaacctaacaaggctttagtatcattctcacattcatc 387
Query: 206 attcatgctgtctttgattgcccttaacaagatttcatatcagctatttgtctgggaaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attcatgctgtctttgattgcccttaacaagatttcatatcagctatttgtctgggaaat 327
Query: 266 gttaatcaggagtgttgcagagtctttaagatattttctatcagtgccttatatatgtat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttaatcaggagtgttgcagagtctttaagatattttctatcagtgccttatatatgtat 267
Query: 326 atcacctcgaaacatttggcattaaacattctaatatcgattccgtcaacgtatataatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atcacctcgaaacatttggcattaaacattctaatatcgattccgtcaacgtatataatt 207
Query: 386 ggatcgggtttcgaaagaaacgagattatcaaagcacaaatgttttaagaatattatcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggatcgggtttcgaaagaaacgagattatcaaagcacaaatgttttaagaatattatcaa 147
Query: 446 attataacgtgggaagttttgagccatgttatgatgatctcctgcaggctttaaagtgcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 attataacgtgggaagttttgagccatgttatgatgatctcctgcaggctttaaagtgcg 87
Query: 506 ttcattcttgagtcatgatatgatgattcaagccaaaataaaaaaacaagaaaaaaaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ttcattcttgagtcatgatatgatgattcaagccaaaataaaaaaacaagaaaaaaaaat 27
Query: 566 aaaggcaattaatttg 581
||||||||||||||||
Sbjct: 26 aaaggcaattaatttg 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8842
Number of Sequences: 1807
Number of extensions: 8842
Number of successful extensions: 133
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)