BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA01RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1773 1110 0.0
3x_Contig1213 1070 0.0
3x_Contig1790 1055 0.0
3x_Contig1805 1047 0.0
3x_Contig1124 1029 0.0
>3x_Contig1773
Length = 8694
Score = 1110 bits (560), Expect = 0.0
Identities = 603/614 (98%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 49 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7464 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 7523
Query: 109 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7524 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 7583
Query: 169 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7584 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 7643
Query: 229 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 7703
Query: 289 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7704 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 7763
Query: 349 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7764 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 7823
Query: 409 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatctac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7824 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatctac 7883
Query: 469 caaatatataaaataggtngtgtttactggatctgtcgtaatatctttagctgtatattc 528
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7884 caaatatataaaataggtgttgtttactggatctgtcgtaatatctttagctgtatattc 7943
Query: 529 acttagtattttttgatgatcggtttatatattgtcatttaaacttcgctcagtatagat 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7944 acttagtattttttgatgatcggtttatatattgtcatttagacttcgctcagtatagat 8003
Query: 589 aatct-ata-cgncggcatgtacattagcttggtttatttggaggtttta-tggcctttt 645
||||| ||| || || |||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 8004 aatctaataccgccgccatgtacattagcttggtttatttggaggttttattgtcctttt 8063
Query: 646 ggctactttttccg 659
|||||||| ||||
Sbjct: 8064 cgctactttctccg 8077
>3x_Contig1213
Length = 3226
Score = 1070 bits (540), Expect = 0.0
Identities = 598/614 (97%), Gaps = 3/614 (0%)
Strand = Plus / Minus
Query: 49 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 1175
Query: 109 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 1115
Query: 169 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 228
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 tggggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 1055
Query: 229 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 995
Query: 289 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 935
Query: 349 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 875
Query: 409 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatctac 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 874 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatttac 815
Query: 469 caaatatataaaataggtngtgtttactggatctgtcgtaatatctttagctgtatattc 528
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 caaagatataaaataggtgttgtttactggatctgtcgtaatatctttagctgtatattc 755
Query: 529 acttagtattttttgatgatcggtttatatattgtcatttaaacttcgctcagtatagat 588
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 754 acttagtattttttgatgatcggtttatatattatcatttagacttcgctcagtatagat 695
Query: 589 aatct-ata-cgncggcatgtacattagcttggtttatttggaggtttta-tggcctttt 645
||||| ||| || || ||||||||||||||||||||||||||| |||||| || ||||||
Sbjct: 694 aatctaataccgccgccatgtacattagcttggtttatttggaagttttattgtcctttt 635
Query: 646 ggctactttttccg 659
|||||||| ||||
Sbjct: 634 cgctactttctccg 621
>3x_Contig1790
Length = 27369
Score = 1055 bits (532), Expect = 0.0
Identities = 596/614 (97%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 49 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3900 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 3959
Query: 109 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3960 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 4019
Query: 169 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 228
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4020 tgtggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 4079
Query: 229 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4080 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 4139
Query: 289 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 348
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4140 atcgcgtgataacatgtatcggaggaagtagatcttttgagaaaaaggcttggcacctac 4199
Query: 349 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4200 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 4259
Query: 409 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatctac 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4260 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatttac 4319
Query: 469 caaatatataaaataggtngtgtttactggatctgtcgtaatatctttagctgtatattc 528
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4320 caaagatataaaataggtgttgtttactggatctgtcgtaatatctttagctgtatattc 4379
Query: 529 acttagtattttttgatgatcggtttatatattgtcatttaaacttcgctcagtatagat 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4380 acttagtattttttgatgatcggtttatatattgtcatttagacttcgctcagtatagat 4439
Query: 589 aatct-ata-cgncggcatgtacattagcttggtttatttggaggtttta-tggcctttt 645
||||| ||| || || ||||||||||||||||||||||||||| |||||| || ||||||
Sbjct: 4440 aatctaataccgccgccatgtacattagcttggtttatttggaagttttattgtcctttt 4499
Query: 646 ggctactttttccg 659
|||||||| ||||
Sbjct: 4500 cgctactttctccg 4513
>3x_Contig1805
Length = 19369
Score = 1047 bits (528), Expect = 0.0
Identities = 595/614 (96%), Gaps = 3/614 (0%)
Strand = Plus / Minus
Query: 49 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17983 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 17924
Query: 109 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17923 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 17864
Query: 169 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 228
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17863 tggggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 17804
Query: 229 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17803 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 17744
Query: 289 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 348
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17743 atcgcgtgataacatgtatcggaggaagtagatcttttgagaaaaaggcttggcacctac 17684
Query: 349 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17683 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 17624
Query: 409 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatctac 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 17623 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatttac 17564
Query: 469 caaatatataaaataggtngtgtttactggatctgtcgtaatatctttagctgtatattc 528
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 17563 caaagatataaaataggtgttgtttactggatctgtcgtaatatctttagctgtatcttc 17504
Query: 529 acttagtattttttgatgatcggtttatatattgtcatttaaacttcgctcagtatagat 588
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 17503 acttagtattttttgatgatcggtttatatattatcatttagacttcgctcagtatagat 17444
Query: 589 aatct-ata-cgncggcatgtacattagcttggtttatttggaggtttta-tggcctttt 645
||||| ||| || || ||||||||||||||||||||||||||| |||||| || ||||||
Sbjct: 17443 aatctaataccgccgccatgtacattagcttggtttatttggaagttttattgtcctttt 17384
Query: 646 ggctactttttccg 659
|||||||| ||||
Sbjct: 17383 cgctactttctccg 17370
>3x_Contig1124
Length = 2635
Score = 1029 bits (519), Expect = 0.0
Identities = 539/546 (98%)
Strand = Plus / Plus
Query: 49 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2081 gtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccatgttttctgga 2140
Query: 109 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2141 gcctttaacaataaatcctgattatgcactgcttttcattccgtattaggtataatgatt 2200
Query: 169 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2201 tcgggtgttttgggattttcactgatcatagctcttagacttaatattttcgattgcctt 2260
Query: 229 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2261 gaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttgagcaattatc 2320
Query: 289 ttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggcttggcacctac 348
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2321 ttcgcgtgataacatgtatcggaggaagtagatcttttgagaaaaaggcttggcacctac 2380
Query: 349 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2381 gctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcctttaatgtggt 2440
Query: 409 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatctac 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2441 ccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcattcgtatttac 2500
Query: 469 caaatatataaaataggtngtgtttactggatctgtcgtaatatctttagctgtatattc 528
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2501 caaagatataaaataggtgttgtttactggatctgtcgtaatatctttagctgtatattc 2560
Query: 529 acttagtattttttgatgatcggtttatatattgtcatttaaacttcgctcagtatagat 588
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2561 acttagtattttttgatgatcggtttatatattatcatttagacttcgctcagtatagat 2620
Query: 589 aatcta 594
||||||
Sbjct: 2621 aatcta 2626
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7015
Number of Sequences: 1807
Number of extensions: 7015
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 5
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)