BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA02FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1433 0.0
>3x_Contig1731
Length = 24233
Score = 1433 bits (723), Expect = 0.0
Identities = 796/809 (98%), Gaps = 9/809 (1%)
Strand = Plus / Plus
Query: 86 ccattatgaaatgttaattcactttactaacttatgcatcacattctctcgtcgcatgcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20776 ccattatgaaatgttaattcactttactaacttatgcatcacattctctcgtcgcatgcg 20835
Query: 146 -tgtgagttcctttttcttttgtgcagaattgattactgaagctattgttgctctagctg 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20836 ctgtgagttcctttttcttttgtgcagaattgattactgaagctattgttgctctagctg 20895
Query: 205 aacgtggtggttcttctaggcaagctttgaagtctttcatcaaggaaaaatacccagttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20896 aacgtggtggttcttctaggcaagctttgaagtctttcatcaaggaaaaatacccagttg 20955
Query: 265 gtgaaaacttcgacacccaattcaacctggctgtcaagagagggttggagactgagttct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20956 gtgaaaacttcgacacccaattcaacctggctgtcaagagagggttggagactgagttct 21015
Query: 325 tctctcaaccaaagggacctgctggttctatcaaattggtgaaaaaaccaaaggctgagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21016 tctctcaaccaaagggacctgctggttctatcaaattggtgaaaaaaccaaaggctgagt 21075
Query: 385 ccaagaaggcagctccttctgctgttaagaaatcttctactaccaagaagccagctgcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21076 ccaagaaggcagctccttctgctgttaagaaatcttctactaccaagaagccagctgcca 21135
Query: 445 ccaccaagaagagctctactagttcaaaaaaggcttctgctggtaaggtcgtcaagaagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21136 ccaccaagaagagctctactagttcaaaaaaggcttctgctggtaaggtcgtcaagaagg 21195
Query: 505 agtcttcaaagaagaccactgctaagaaagcagctaccaagaaggctcctgctaagaaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21196 agtcttcaaagaagaccactgctaagaaagcagctaccaagaaggctcctgctaagaaga 21255
Query: 565 ctgccgttaagaagtccaagaaataaagttaatcaaatttcgaatcactttattntttta 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 21256 ctgccgttaagaagtccaagaaataaagttaatcaaatttcgaatcactttattttttta 21315
Query: 625 cctcctgtgaatatcgattcacctaacttcttaatgcgtgtgttgtattttactaccttc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21316 cctcctgtgaatatcgattcacctaacttcttaatgcgtgtgttgtattttactaccttc 21375
Query: 685 ctttgatacttctgtctacccttaataattcagttcaaatcgggttatttntgtgttaat 744
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct: 21376 ctttgatacttctgtctacccttaataattcagttcaaatc-ggttatttttgtgtt-at 21433
Query: 745 ttaaatcaattataccctttatcaccactctattattttcttccttgaaaaattgtnctt 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21434 ttaaatcaattataccctttatcaccactctattattttcttccttgaaaaattgt-ctt 21492
Query: 805 tcttgttgaaatatattccacccctttcctgtccttttaccctacttatttcttttggac 864
|| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||
Sbjct: 21493 tc-tgttgaaatatattccacccc-ttcctgtcc-tttaccctacttattcctttt-gac 21548
Query: 865 tacatt-accattatttattccaacccaa 892
|||||| ||||| ||||||||||||||||
Sbjct: 21549 tacattcaccatcatttattccaacccaa 21577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7107
Number of Sequences: 1807
Number of extensions: 7107
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)