BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA03FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1447 0.0
>3x_Contig1710
Length = 16151
Score = 1447 bits (730), Expect = 0.0
Identities = 804/820 (98%), Gaps = 7/820 (0%)
Strand = Plus / Minus
Query: 87 tgagagtcttgagattgaagccaggtagaaagtacaccaccttgggtaagctatctactt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11548 tgagagtcttgagattgaagccaggtagaaagtacaccaccttgggtaagctatctactt 11489
Query: 147 ccgttggttggaaatacgaagatgtcgttgccaagttggaagaaaagagaaaggctagat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11488 ccgttggttggaaatacgaagatgtcgttgccaagttggaagaaaagagaaaggctagat 11429
Query: 207 ctgctgaatactacttgaagaagaaggcttacaacgccgtcgttgccaacaagtctgcta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11428 ctgctgaatactacttgaagaagaaggcttacaacgccgtcgttgccaacaagtctgcta 11369
Query: 267 ctgttggtactgaagtttccgaaaagttggctgctctaggttactaaactccatcatcaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11368 ctgttggtactgaagtttccgaaaagttggctgctctaggttactaaactccatcatcaa 11309
Query: 327 acaacatataaattttctaaagctcatcaaattgtatatcatttgtaaaacgttattacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11308 acaacatataaattttctaaagctcatcaaattgtatatcatttgtaaaacgttattacc 11249
Query: 387 atctttacaattttattaatattaattgattgatgtattgaatagttacattacgacaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11248 atctttacaattttattaatattaattgattgatgtattgaatagttacattacgacaat 11189
Query: 447 aataaagaagctatatggttcttgagggtatcgccctgggccgcgatttttttctatgca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11188 aataaagaagctatatggttcttgagggtatcgccctgggccgcgatttttttctatgca 11129
Query: 507 tgattatatatttgtataactgtccttgatctgagtactattctgtaatacaaaccatac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11128 tgattatatatttgtataactgtccttgatctgagtactattctgtaatacaaaccatac 11069
Query: 567 atgcactaaccgataataaatagtcttttcatgaaatatgcttaaaatgttcataaactc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11068 atgcactaaccgataataaatagtcttttcatgaaatatgcttaaaatgttcataaactc 11009
Query: 627 cgaatgttatgcaggtagatggaatggctcgtactaagtttgcaaacaaacccttataaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11008 cgaatgttatgcaggtagatggaatggctcgtactaagtttgcaaacaaacccttataaa 10949
Query: 687 atcctgcaataccattagtatgccagatagatcgtattagagaattcattntactgtttt 746
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10948 atcctgcaataccattagtatgccagatagatcgtattagagaattcattttactgtttt 10889
Query: 747 cattatgttcagttctggaaggttgtaaattagtcttttaatattgcaacggatacacag 806
||||||||||||||||| | | |||||||||||||||| | ||||||||||||||||||
Sbjct: 10888 cattatgttcagttctgaaggtttgtaaattagtctttaataattgcaacggatacacag 10829
Query: 807 aactgacagaaatcattttttgaaagtgatattatgccctatgggtttctacggcattta 866
||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 10828 aactgacagaaatca-tttttgaaagtgatattatg-cctat-ggtttctaccgcattt- 10773
Query: 867 aacctcctttncctgtnatatcatttnctatcatgtnaat 906
|||||||||| ||||| ||||||||| ||||||||| |||
Sbjct: 10772 aacctccttt-cctgt-atatcattt-ctatcatgtaaat 10736
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)