BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA04RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1481 0.0
>3x_Contig1386
Length = 5452
Score = 1481 bits (747), Expect = 0.0
Identities = 787/800 (98%), Gaps = 2/800 (0%)
Strand = Plus / Minus
Query: 44 tcaagctttggaagaagagaaggccagattggaacaagaaattaaagaagctcaagaact 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tcaagctttggaagaagagaaggccagattggaacaagaaattaaagaagctcaagaact 743
Query: 104 tcaccaacaaaacgtctccaagatcgaaagtatcgacaacaaggagtacttacctaaggt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcaccaacaaaacgtctccaagatcgaaagtatcgacaacaaggagtacttacctaaggt 683
Query: 164 caatgaaattaataccgaaatttcttcactacttgcttcgttaggtttaattcaacaaga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caatgaaattaataccgaaatttcttcactacttgcttcgttaggtttaattcaacaaga 623
Query: 224 aattgccaaccaaaaggtcgagttttctagtgttactaggagattggaggaagagcgtaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aattgccaaccaaaaggtcgagttttctagtgttactaggagattggaggaagagcgtaa 563
Query: 284 acaacatgaagaacaattgctaaaagaaaaagaggaacgtgagcgtttagaaaaggagcg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaacatgaagaacaattgctaaaagaaaaagaggaacgtgagcgtttagaaaaggagcg 503
Query: 344 tttagaaaagcaacgtaccgagtacgaaaagcaagctgaagaagctcgtttgaagcacga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttagaaaagcaacgtaccgagtacgaaaagcaagctgaagaagctcgtttgaagcacga 443
Query: 404 agaagagctggctaacctgaagcaaactcacgacgaggcgctgaaggaggcacagttgca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaagagctggctaacctgaagcaaactcacgacgaggcgctgaaggaggcacagttgca 383
Query: 464 acgtgaagctgcggccaaacaacttgaagaagaacaacagagacgtgaacaagtagaacg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acgtgaagctgcggccaaacaacttgaagaagaacaacagagacgtgaacaagtagaacg 323
Query: 524 tgaaagaactcgtctacaaggtgaaaaggctattgaagcacaacaacgaggtaatcccga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgaaagaactcgtctacaaggtgaaaaggctattgaagcacaacaacgaggtaatcccga 263
Query: 584 agacaagagactggaagctgaacacgaagaatagttgagaaggcaagcagaagctgccag 643
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 262 agacaagagactggaagctgaacacgaagaaaagttgagaaggcaagcagaagctgccag 203
Query: 644 tgcagtcgaaaatgccctgaagagtagcaacaaaaaaacgaaagcagctgttccacctgc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgcagtcgaaaatgccctgaagagtagcaacaaaaaaacgaaagcagctgttccacctgc 143
Query: 704 anacaccacanattcttctctatatgactacgaaaccgttgaagaagtcataactgttga 763
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aaacaccacaaattcttctctatatgactacgaaaccgttgaagaagtcataactgttga 83
Query: 764 ttgaat-acaanagagatcttanaacgaaataacattaaacattggactnntgtatttct 822
|||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 82 ttgaataacaaaagagatcttaaaacgaaataacattaaacattggactttgtaatttct 23
Query: 823 -aaatatgtcgnttctaatt 841
|||||||||| ||||||||
Sbjct: 22 aaaatatgtcgtttctaatt 3
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7105
Number of Sequences: 1807
Number of extensions: 7105
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)