BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA05FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1540 0.0
>3x_Contig1486
Length = 12131
Score = 1540 bits (777), Expect = 0.0
Identities = 826/841 (98%), Gaps = 1/841 (0%)
Strand = Plus / Plus
Query: 83 tcgaagttcaaaacagaagacgtgctatatgtagcagaaaaatggtttctccgtccttta 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 tcgaagttcaaaacagaagacgtgctatatgtagcagaaaaatggtttctccgtccttta 8974
Query: 143 atgatatcagacacattttaaactctgcccagattttggccttactcaaatcgaaagaat 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8975 atgatatcagacacattttaaactctgcccagattttggccttactcaaatcgaaagaat 9034
Query: 203 tgaaattggtcacttttgatggtgacgttacgctatatgaggatgggggatccattgaaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9035 tgaaattggtcacttttgatggtgacgttacgctatatgaggatgggggatccattgaaa 9094
Query: 263 gaggtggtaaaatcgttacaaggattatcacgttgttgaaacgtgggatcaacgttggtg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9095 gaggtggtaaaatcgttacaaggattatcacgttgttgaaacgtgggatcaacgttggtg 9154
Query: 323 ttgtcactgccgccgggtatgatgacccagataaatacaaggaacgtctgtatggactat 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9155 ttgtcactgccgccgggtatgatgacccagataaatacaaggaacgtctgtatggactat 9214
Query: 383 gctttgcgttgttctccgataagtcaatgtcgttggaacagaaatcaaaattgaccgtta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9215 gctttgcgttgttctccgataagtcaatgtcgttggaacagaaatcaaaattgaccgtta 9274
Query: 443 tgggaggtgaatctaactatttgttccagtatttcgagacctcggaacaatttggtttta 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275 tgggaggtgaatctaactatttgttccagtatttcgagacctcggaacaatttggtttta 9334
Query: 503 agtccattgatgacgatgaatgggtgccctcaagtgttaaagcttggtctgatgatgata 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9335 agtccattgatgacgatgaatgggtgccctcaagtgttaaagcttggtctgatgatgata 9394
Query: 563 tcgacgctaccttagacgtcgcacagacgtgttttggcgaattaagtcatctgcttgcat 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9395 tcgacgctaccttagacgtcgcacagacgtgttttggcgaattaagtcatctgcttgcat 9454
Query: 623 taccatcgaaatgtcaaattatccgcaaaaaaagagcagttggatttgtccctggtttca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9455 taccatcgaaatgtcaaattatccgcaaaaaaagagcagttggatttgtccctggtttca 9514
Query: 683 tcttcgatgatgaactagaggttaacgttaagatcaaaatcccaagagaagcgttggagg 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9515 tcttcgatgatgaactagaggttaacgttaagatcaaaatcccaagagaagcgttggagg 9574
Query: 743 atatggttcttgttgtacaaaagaaactagaatcatatccacccgcacaaaatatacaat 802
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9575 aaatggttcttgttgtacaaaagaaactagaatcatatccacccgcacaaaatatacaat 9634
Query: 803 ttatttgctttgaatgtggcagcgatgtttggtgtgatattggggggaaagacctgggtg 862
||| ||||||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 9635 ttagttgctttgatggtggcagcgatgtttggtgtgatattggtggtaaagacctgggtg 9694
Query: 863 ggtctattctacctaatttttaccaaacagactctcccattacagcgggcgcatacgtta 922
|||||| ||| ||||||||||||||||||||||| || ||||| |||||| ||||||
Sbjct: 9695 tgtctatcttacagaatttttaccaaacagactctccgatcacagc-ggcgcaaacgtta 9753
Query: 923 c 923
|
Sbjct: 9754 c 9754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)