BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA05RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1584 0.0
>3x_Contig1766
Length = 23951
Score = 1584 bits (799), Expect = 0.0
Identities = 854/866 (98%), Gaps = 5/866 (0%)
Strand = Plus / Plus
Query: 47 ttcagtctacccaatctttcggatgatatgatttgcgaatcgccttcaggcaccaataaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19854 ttcagtctacccaatctttcggatgatatgatttgcgaatcgccttcaggcaccaataaa 19913
Query: 107 ataaccttagccttaggggaataatgtctatatttcatacctggagttttgactttttca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19914 ataaccttagccttaggggaataatgtctatatttcatacctggagttttgactttttca 19973
Query: 167 tcgtccttgatgtttactttagtctctaccagacactctttccatagaggtccgccaatg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19974 tcgtccttgatgtttactttagtctctaccagacactctttccatagaggtccgccaatg 20033
Query: 227 tttagaatattctcataggtaaaaccacctggccttaataacattggcggagttacaagc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20034 tttagaatattctcataggtaaaaccacctggccttaataacattggcggagttacaagc 20093
Query: 287 ccatcgactacagtagattcgacaccaacagaacatttaccaccatctaaaataagtggt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20094 ccatcgactacagtagattcgacaccaacagaacatttaccaccatctaaaataagtggt 20153
Query: 347 attctaccattcaagtcatggaatacgtgttcagcggtcgttggtgatggtcttgtagat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20154 attctaccattcaagtcatggaatacgtgttcagcggtcgttggtgatggtcttgtagat 20213
Query: 407 gcgttggctgaaggtgctgcgattggggtatcactcaatgctattaatgctcttgcaatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20214 gcgttggctgaaggtgctgcgattggggtatcactcaatgctattaatgctcttgcaatc 20273
Query: 467 ggattagcagggattcgacacgcaaatgttggttgatttgcagtagtcaatttggataat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20274 ggattagcagggattcgacacgcaaatgttggttgatttgcagtagtcaatttggataat 20333
Query: 527 gtgtttctgtttgaaccgtcgggaattgataagagtatggtaagtggcccaggccacagt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20334 gtgtttctgtttgaaccgtcgggaattgataagagtatggtaagtggcccaggccacagt 20393
Query: 587 ttttccactaatggatgataaatctctggtacatgggaaagaggcttacaatcatcagag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20394 ttttccactaatggatgataaatctctggtacatgggaaagaggcttacaatcatcagag 20453
Query: 647 atatctgagtatatgacacggttaagttgagatagggacgaaatatgggttatcaaaggg 706
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20454 atatctgagtatatgacacggttaagttgagaaagggacgaaatatgggttatcaaaggg 20513
Query: 707 ttatcgctaggtctgttctttgccttgtatatattttttacagattcatcgttcaaggca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20514 ttatcgctaggtctgttctttgccttgtatatattttttacagattcatcgttcaaggca 20573
Query: 767 gaaacctnc-agtccatacacagttctcagtttggaaaggcaacagtttcttgagtatct 825
| ||||| | ||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct: 20574 g-aacctccaagtccatacacag-tctcag-ttggaaaggcaacagtttctgaggtatct 20630
Query: 826 cgtattataccagcagcttctaacaagtttttttcagttt-agcacatgtgaatgtcggt 884
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 20631 cgtattataccagcagcttctaacaggtttttttcagtttcagcacatgtgaatgtcggt 20690
Query: 885 aaagattcgtctatatgggcactatc 910
|||||| |||||||||||||||||||
Sbjct: 20691 aaagatccgtctatatgggcactatc 20716
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5495
Number of Sequences: 1807
Number of extensions: 5495
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)