BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA06FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1390 0.0
>3x_Contig1731
Length = 24233
Score = 1390 bits (701), Expect = 0.0
Identities = 788/809 (97%), Gaps = 7/809 (0%)
Strand = Plus / Plus
Query: 86 ccattatgaaatgttaattcactttactaacttatgcatcacattctctcgtcgcatgcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20776 ccattatgaaatgttaattcactttactaacttatgcatcacattctctcgtcgcatgcg 20835
Query: 146 -tgtgagttcctttttcttttgtgcagaattgattactgaagctattgttgctctagctg 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20836 ctgtgagttcctttttcttttgtgcagaattgattactgaagctattgttgctctagctg 20895
Query: 205 aacgtggtggttcttctatgcaagctttgaagtctttcatcaaggaaaaatacccagttg 264
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 20896 aacgtggtggttcttctaggcaagctttgaagtctttcatcaaggaaaaatacccagttg 20955
Query: 265 gtgaaaacttcgacacccaattcaacctggctgtcaagagagggttggagactgagttct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20956 gtgaaaacttcgacacccaattcaacctggctgtcaagagagggttggagactgagttct 21015
Query: 325 tctctcaaccaaagggacctgctggttctatcaaattggtgaaaaaaccaaaggctgagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21016 tctctcaaccaaagggacctgctggttctatcaaattggtgaaaaaaccaaaggctgagt 21075
Query: 385 ccaagaaggcagctccttctgctgttaagaaatcttctactaccaagaagccagctgcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21076 ccaagaaggcagctccttctgctgttaagaaatcttctactaccaagaagccagctgcca 21135
Query: 445 ccaccaagaagagctctactagttcaaaaaaggcttctgctggtaaggtcgtcaagaagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21136 ccaccaagaagagctctactagttcaaaaaaggcttctgctggtaaggtcgtcaagaagg 21195
Query: 505 agtcttcaaagaagaccactgctaagaaagcagctaccaagaaggctcctgctaagaaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21196 agtcttcaaagaagaccactgctaagaaagcagctaccaagaaggctcctgctaagaaga 21255
Query: 565 ctgccgttaagaagtccaagatataaagttaatcaaatttcgaatcactttattttttta 624
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 21256 ctgccgttaagaagtccaagaaataaagttaatcaaatttcgaatcactttattttttta 21315
Query: 625 cctcctgtgaatatcgattcacctaacttcttaatgcgtgtgttgtattttactaccttc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21316 cctcctgtgaatatcgattcacctaacttcttaatgcgtgtgttgtattttactaccttc 21375
Query: 685 ctttgatactgctgtctacccttaataatgcagttcanatcggntattttttgtggttat 744
|||||||||| |||||||||||||||||| ||||||| ||||| || ||||||| |||||
Sbjct: 21376 ctttgatacttctgtctacccttaataattcagttcaaatcggtta-tttttgt-gttat 21433
Query: 745 ttaaatcaattataccctttatcaccactctattattttcttccttgaaaaatgnncttt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 21434 ttaaatcaattataccctttatcaccactctattattttcttccttgaaaaattgtc-tt 21492
Query: 805 tctgttg-aatatattttcacccttcctgtccctttaccctacttattcctttttgacta 863
||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct: 21493 tctgttgaaatatattccaccccttcctgt-cctttaccctacttattcc-ttttgacta 21550
Query: 864 cattcaccatcatttatttcaacccaaac 892
|||||||||||||||||| ||||||||||
Sbjct: 21551 cattcaccatcatttattccaacccaaac 21579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7202
Number of Sequences: 1807
Number of extensions: 7202
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)