BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1217 0.0
>3x_Contig1338
Length = 8134
Score = 1217 bits (614), Expect = 0.0
Identities = 706/732 (96%), Gaps = 4/732 (0%)
Strand = Plus / Plus
Query: 47 accttctacactgggttggaagat-ataaagagtatcctgaagctatcttcggtaacaga 105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1084 accttctacactgggttggaagattataaagagtatcctgaagctatcttcggtaacaga 1143
Query: 106 ccagaaggtgttaaccatggtcaacacgttggtagagaatcttgggtcgaaagaagagct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 ccagaaggtgttaaccatggtcaacacgttggtagagaatcttgggtcgaaagaagagct 1203
Query: 166 aaagaatccactttcactgaagaccatcaaccaactgtcttgatcgttggtggtggacaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 aaagaatccactttcactgaagaccatcaaccaactgtcttgatcgttggtggtggacaa 1263
Query: 226 ggtggtttaactgtcgcagcaagattgaagatgtttggggttaactccttgatcattgaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 ggtggtttaactgtcgcagcaagattgaagatgtttggggttaactccttgatcattgaa 1323
Query: 286 atgaaccccaagattggtgataactggagaaaccgttacaagtttttggttttgcatgac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 atgaaccccaagattggtgataactggagaaaccgttacaagtttttggttttgcatgac 1383
Query: 346 ccagtctggtatgaccatttgccatatttgaacttcccaccatcttggccaattttcact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 ccagtctggtatgaccatttgccatatttgaacttcccaccatcttggccaattttcact 1443
Query: 406 ccaaaagataagattggtgattggtttgaaggttatgcaaagacaatggatttgaactat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 ccaaaagataagattggtgattggtttgaaggttatgcaaagacaatggatttgaactat 1503
Query: 466 aaatgtagttccatggttaccggtgctacttttgatgacgtttcgaacaaatggacagtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 aaatgtagttccatggttaccggtgctacttttgatgacgtttcgaacaaatggacagtt 1563
Query: 526 caagttaaggatttcaatacgggtaagattatcacatacaccccagatcattttgttatg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1564 caagttaaggatttcaatacgggtaagattatcacatacaccccagatcatttggttatg 1623
Query: 586 gccactggtcattcncgtgaatcacgtatgccctagttcccagaccaagagttgttcaag 645
|||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||
Sbjct: 1624 gccactggtcattccggtgaaccacgtatgcctaagttccaagaccaagagttgttcaag 1683
Query: 646 gggaaaatcgttcactctttccagcatgaatctgttgctgaattcattggtgggaatgca 705
||||||||||||||||||| | |||||| ||||| ||||||||||| ||||||||| |||
Sbjct: 1684 gggaaaatcgttcactcttccaagcatggatctggtgctgaattcagtggtgggaaggca 1743
Query: 706 tttanttgttggtgggttgtaattctgcccatggatttttgcccagattttttacaacaa 765
||| |||||||| |||||||||||||| ||| ||| |||||| |||||| | |||||
Sbjct: 1744 -ttagttgttggt-ggttgtaattctgcacat-gatatttgccaagatttctacgaacaa 1800
Query: 766 aacggtgatgtt 777
|||| |||||||
Sbjct: 1801 aacgttgatgtt 1812
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6409
Number of Sequences: 1807
Number of extensions: 6409
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)