BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA07RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig830 876 0.0
3x_Contig1337 170 3e-42
>3x_Contig830
Length = 3109
Score = 876 bits (442), Expect = 0.0
Identities = 615/650 (94%), Gaps = 19/650 (2%)
Strand = Plus / Minus
Query: 283 ctgcgcttgtgagacaaaacacaaataagaaccatctggagttaaatgcaatgcggtgat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3109 ctgcgcttgtgagacaaaacacaaataagaaccatctggagttaaatgcaatgcggtgat 3050
Query: 343 gtcttgttcatcctcagtatcaacagaatgcaacactcggcgtgggctatctaagctaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 gtcttgttcatcctcagtatcaacagaatgcaacactcggcgtgggctatctaagctaac 2990
Query: 403 aatgttgattttatcgacgaccgaagtcgctaataatcgtccatcttcagaaacagatgc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 aatgttgattttatcgacgaccgaagtcgctaataatcgtccatcttcagaaacagatgc 2930
Query: 463 tatagcaccagtaccagcataaaacggctctagtttcgtggatgcataggtagttctcaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 tatagcaccagtaccagcataaaacggctctagtttcgtggatgcataggtagttctcaa 2870
Query: 523 atccattgtgcgagtgggagatccaaggtgctgtcctgngtgctaataattggccaggta 582
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2869 atccattgtgcgagtgggagatccaaggtgctgtcctgggtgctaataattggccaggta 2810
Query: 583 taatcttattggttcacctagcatatttctgtgatgcgatgagatgagatgagatgaaat 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2809 taatcttattggttcacctagcatatttctgtgatgcgatgagatgagatgagatgaa-t 2751
Query: 643 taaacttt-caacattcgaatttgacanaaaaaagataaaaacgtagacaatgaggcatg 701
|||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct: 2750 taaacttttcaacattcgaattgaacaaaaaaaagaaaaaaacgtagacaatgaggcat- 2692
Query: 702 gggttatcatatgnctngaaacagaaagagattggacattatacaaggaggctg-aaacc 760
||||||||||||| || ||||||||||||||||| ||| ||||||| | |||| |||||
Sbjct: 2691 gggttatcatatg-cttgaaacagaaagagattgaaca-tatacaaaggagctgaaaacc 2634
Query: 761 gggaacggtctttagac-atgtttatttgcactta-acatatttgctaaata-ttgctaa 817
||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 2633 gggaacggtctttagacaatgtttatttgcacttacacatatttgctaaatatttgctaa 2574
Query: 818 tattctaa-gga-atgatttttaaagtt-attgttga-ttatgaaaagaagt--cacact 871
|||||||| ||| |||| |||||||||| |||||||| ||||| | |||||| |||||
Sbjct: 2573 tattctaatggatatga-ttttaaagttaattgttgatttatg-agagaagtacaacact 2516
Query: 872 cctctttaggaaaaaatggggaa-ctgaatagagatt-acagaatgatat 919
|||||| ||||||||||| ||| |||||||||| || ||||||||||||
Sbjct: 2515 cctcttacggaaaaaatggtgaagctgaatagagcttcacagaatgatat 2466
>3x_Contig1337
Length = 7771
Score = 170 bits (86), Expect = 3e-42
Identities = 93/94 (98%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 50 ccaaatttcactgttcaactcaccgtgaaactttacacttgaaatggtagcaccatgtcc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 ccaaatttcactgttcaactcaccgtgaaactttacacttgaaatggtagcaccatgtcc 7737
Query: 110 ttt-aaagagtgcgtgacatatccattttcaata 142
||| ||||||||||||||||||||||||||||||
Sbjct: 7738 tttcaaagagtgcgtgacatatccattttcaata 7771
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7614
Number of Sequences: 1807
Number of extensions: 7614
Number of successful extensions: 504
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)