BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA08FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1445 0.0
>3x_Contig1486
Length = 12131
Score = 1445 bits (729), Expect = 0.0
Identities = 814/833 (97%), Gaps = 7/833 (0%)
Strand = Plus / Plus
Query: 87 tacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2967 tacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtat 3026
Query: 147 taagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3027 taagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtga 3086
Query: 207 acaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaagggaaagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3087 acaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaagggaaagc 3146
Query: 267 tctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 tctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcac 3206
Query: 327 tagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 tagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaata 3266
Query: 387 ctctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 ctctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacat 3326
Query: 447 tggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaactta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 tggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaactta 3386
Query: 507 tagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaa 3446
Query: 567 ctgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3447 ctgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttc 3506
Query: 627 caatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttgcata 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3507 caatagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttgcata 3566
Query: 687 cttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgttat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3567 cttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgttat 3626
Query: 747 taagaagaacgagagacgcagccaacgatacattcatacatgcgccttacgaagcacttt 806
||||| ||||||||||||||||||||||||| |||||||||||| ||||| |||| ||
Sbjct: 3627 taagagaaacgagagacgcagccaacgatacaatcatacatgcgctttacg-agcaactt 3685
Query: 807 ttagctttgcaacaaaagctattggcaattac-accatttctgactgggaag-attcg-a 863
|||||||||||||||||||||||| |||| || ||||||||||||||||||| || || |
Sbjct: 3686 ttagctttgcaacaaaagctattgccaatcacaaccatttctgactgggaagaatacgaa 3745
Query: 864 gagattatggat-cactc-cacctttattc-ttgaagctgccgaatcgtggtg 913
|||||||||||| ||||| ||| ||||||| ||||||||| |||| |||||||
Sbjct: 3746 gagattatggatccactcacacgtttattcgttgaagctggcgaagcgtggtg 3798
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6452
Number of Sequences: 1807
Number of extensions: 6452
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)