BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA08RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig488 1179 0.0
>3x_Contig488
Length = 1926
Score = 1179 bits (595), Expect = 0.0
Identities = 675/694 (97%), Gaps = 7/694 (1%)
Strand = Plus / Plus
Query: 49 tattcatagagatcggagtacgccaggaagttcgataaatcctgatcgacagaatgtgac 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tattcatagagatcggag-acgccaggaagttcgataaatcctgatcgacagaatgtgac 658
Query: 109 gaatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatatttta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatatttta 718
Query: 169 ccattgatatccagtcctacagcggaattgccttgatgtgattgtttttttcttcttggc 228
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 719 ccattgatatccagtcctacagcggaattgccttgatgtgattgttttttccttcttggc 778
Query: 229 gcacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gcacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattct 838
Query: 289 tctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgat 898
Query: 349 ggattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggccta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ggattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggccta 958
Query: 409 cctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 cctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgt 1018
Query: 469 cctctaatacacctttcacaggcatatttcacaccgttgataagaaccattgtgtgctat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 cctctaatacacctttcacaggcatatttcacaccgttgataagaaccattgtgtgctat 1078
Query: 529 ttgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaaagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 ttgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaaagc 1138
Query: 589 ttcaaaagtcagcagtaagatgccagcaaagggaccatgaatatgancattanggagtgt 648
|||||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||
Sbjct: 1139 ttcaaaagtcagcagtaagaagccagcaaagggacaatgaaaatgacaattagggagtgt 1198
Query: 649 gaatatt-agacaaatgatttaga-taggtcact-caatatgngnngtttctttttcttt 705
||||||| |||||||||| ||||| ||||||||| ||||||| | |||||||||||||
Sbjct: 1199 gaatattaagacaaatgaattagattaggtcactccaatatgtgtgttttctttttcttt 1258
Query: 706 -cttaaag-tgattaag-cgttgtctgactaaaa 736
||||||| |||||||| ||||||||||||||||
Sbjct: 1259 ccttaaagttgattaagccgttgtctgactaaaa 1292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6369
Number of Sequences: 1807
Number of extensions: 6369
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)