BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA09FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig665 1532 0.0
>3x_Contig665
Length = 2101
Score = 1532 bits (773), Expect = 0.0
Identities = 822/837 (98%), Gaps = 2/837 (0%)
Strand = Plus / Plus
Query: 90 tcacttacgccataataacgttttttcaaatcaattgttaaatgtaatcacaatcactac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 tcacttacgccataataacgttttttcaaatcaattgttaaatgtaatcacaatcactac 1243
Query: 150 gcgtaacgaaacagtcaatacgaggctatcaaatagaaaacaattggattctcgttccaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 gcgtaacgaaacagtcaatacgaggctatcaaatagaaaacaattggattctcgttccaa 1303
Query: 210 taactggttaactcatgttgaataatcaactcaacttatatcatgctatgttaatccgct 269
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 taactggttaactcaggttgaataatcaactcaacttatatcatgctatgttaatccgct 1363
Query: 270 cttaatccgaggataaatataaattgctacactactggaaatacgtttctatatacatat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 cttaatccgaggataaatataaattgctacactactggaaatacgtttctatatacatat 1423
Query: 330 ggtacatatcgtctactattataatcagttacgcccatcaatttatagtggagcaggcaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 ggtacatatcgtctactattataatcagttacgcccatcaatttatagtggagcaggcaa 1483
Query: 390 gtttccgatggtgatagtcttgatgacagtatagtcttcaataccgtgcaaagatccctc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 gtttccgatggtgatagtcttgatgacagtatagtcttcaataccgtgcaaagatccctc 1543
Query: 450 tctaccgaatccggattccttaacaccgccgaatggaatggtacactcactgaacaaacc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 tctaccgaatccggattccttaacaccgccgaatggaatggtacactcactgaacaaacc 1603
Query: 510 agtgttgcatgataccataccggtttccaaagcttcagcaacggtgtatacggtatcaat 569
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 agtgttgcatgagaccataccggtttccaaagcttcagcaacggtgtatacggtatcaat 1663
Query: 570 gttcttagagaacacgtatgatgctagacccaattcagtatcgttagcatatcctacgac 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 gttcttagagaacacgtatgatgctagacccaattcagtatcgttagcatatcctacgac 1723
Query: 630 ttcttccatggtatcgaatggaatcaaggcacagagaggaccgaaagtctcatctttatt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724 ttcttccatggtatcgaatggaatcaaggcacagagaggaccgaaagtctcatctttatt 1783
Query: 690 aaccacagccgtggatggaacatgatatagtacggttggagcgtagaagtttggacctaa 749
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1784 aaccacagccgtggatggaacatgagatagtacggttggagcgtagaagtttggacctaa 1843
Query: 750 ttctggcaaacgaccaccagcaacgacgggtctttgcacccttttccaaggcgtccttta 809
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1844 ttctggcaaacgaccaccagcaacgac-ggtctttgcacccttttccaaggcgtccttta 1902
Query: 810 catgagnnctcaactntctttatagcattttcattaattanacatccgtgagtagtcttt 869
|||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1903 catgagct-tcaactttctttatagcattttcattaattagacatccgtgagtagtctta 1961
Query: 870 aaatcccaaacatggccaatgacgaactcgttcacttgtttagcccatttttcagca 926
| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1962 gagtccaaaccatggccaatgacgaactcgttcacttgtttagccaatttttcagca 2018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5253
Number of Sequences: 1807
Number of extensions: 5253
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)