BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA09RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1503 0.0
>3x_Contig1758
Length = 25930
Score = 1503 bits (758), Expect = 0.0
Identities = 851/878 (96%), Gaps = 5/878 (0%)
Strand = Plus / Plus
Query: 48 tggcagagtttttgtttgatgatgaatctaacgttatcagatttgatatgtctgaattcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggcagagtttttgtttgatgatgaatctaacgttatcagatttgatatgtctgaattcc 544
Query: 108 aggagaaacatacagtatcaagattaatcggtgcacctcccggttatgtgttaagtgaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aggagaaacatacagtatcaagattaatcggtgcacctcccggttatgtgttaagtgaaa 604
Query: 168 gcggtggtcagttaactgaagccgtgagacgtaagccatatgctgttgtattatttgatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcggtggtcagttaactgaagccgtgagacgtaagccatatgctgttgtattatttgatg 664
Query: 228 aattcgaaaaggctcatccagatgtttgtaaagtcttattgcaagtattggatgaaggta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aattcgaaaaggctcatccagatgtttgtaaagtcttattgcaagtattggatgaaggta 724
Query: 288 aactaacagattctcaaggtcaccaagttgatttccgtaacaccattgttgttatgacat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aactaacagattctcaaggtcaccaagttgatttccgtaacaccattgttgttatgacat 784
Query: 348 cgaacatcggccaagacattttgctgcatgataccgaattaggtgatgatggtaaggtta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 cgaacatcggccaagacattttgctgcatgataccgaattaggtgatgatggtaaggtta 844
Query: 408 gcaagaagactaagagaagcgtaattgaagctgttaaaaagaactatcctccagaatttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gcaagaagactaagagaagcgtaattgaagctgttaaaaagaactatcctccagaatttg 904
Query: 468 tcaatcgtattgatgatttgattgtctttaacagactatcaaaagaagttctccgttcaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tcaatcgtattgatgatttgattgtctttaacagactatcaaaagaagttctccgttcaa 964
Query: 528 tcgtcgatattagactcaaggaaattcaagatagattgaacgacaagcgtatgaccctaa 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 965 tcgtcgatattagactcaaggaaattcaagaaagattgaacgacaagcgtatgaccctaa 1024
Query: 588 atctaactgacgaagctaaggattggttaactgaaagaggttatgacccattgtacggtg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 atctaactgacgaagctaaggattggttaactgaaagaggttatgacccattgtacggtg 1084
Query: 648 ctagacctttgaacagattgatccatatacatatcctanatccaatggctattcatttgc 707
||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||
Sbjct: 1085 ctagacctttgaacagattgatccataaacaaatcctaaatccaatggctattcaattgc 1144
Query: 708 taatgggtcaattgagacacgangagactggtaatgtggttattgaagatagcaagttaa 767
||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct: 1145 taaggggtcaattgagacacgaggagactgtaaatgtggttattgaagatagcaagtt-a 1203
Query: 768 gtggttaaaccataccacgatccccgattcagtgatcttcgaaatttgac-agc-agctg 825
|||||||||||| ||||||||||| || ||||| || |||| |||| ||| |||||
Sbjct: 1204 gtggttaaaccaaaccacgatcccgaatcaagtgaactcggaaa--tgacaagcaagctg 1261
Query: 826 atgttgagtaaatctcgttggacacccgcaattgcttactctncagcggtatgatcgata 885
|||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 1262 atgttgagtaaatctcgttgaacacccgcaattgctaactctccagcgtaatgatcgata 1321
Query: 886 ttcttgactttctgtgcgtttccactgaattcctaaat 923
||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 ttcttgactttctgtgcgtttccactgaattcctaaat 1359
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6499
Number of Sequences: 1807
Number of extensions: 6499
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)