BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZA10RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig639                                                         1562   0.0  

>3x_Contig639 
          Length = 2382

 Score = 1562 bits (788), Expect = 0.0
 Identities = 817/826 (98%), Gaps = 1/826 (0%)
 Strand = Plus / Plus

                                                                       
Query: 45  ctttgttcgctagagcagtttgggcacgggctaatctgaacattgcgtgtgttgtatgtt 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctttgttcgctagagcagtttgggcacgggctaatctgaacattgcgtgtgttgtatgtt 181

                                                                       
Query: 105 gtgttgttggtgggggagaaaagcgaaagagaggaagaaaaaccaattgatcccagagac 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtgttgttggtgggggagaaaagcgaaagagaggaagaaaaaccaattgatcccagagac 241

                                                                       
Query: 165 aatgataaaaaattgtcaattgaaaaacgactcctttttataatttaacaggtcatatta 224
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 242 aatgataaaaaattgtcaattgaaaaacgactcctttttataatttaacaggtcatatca 301

                                                                       
Query: 225 cagcgcagtccagtgctaagaatttccctcaccaagttaaaccagaaagacggactagtt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagcgcagtccagtgctaagaatttccctcaccaagttaaaccagaaagacggactagtt 361

                                                                       
Query: 285 cgagaaggccaacaagggcaatggcaacatcattggaaaaagtgataaattgtgataagt 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cgagaaggccaacaagggcaatggcaacatcattggaaaaagtgataaattgtgataagt 421

                                                                       
Query: 345 agtgatgcttgatccattagaagagagaaaaaaaaaaaaaatgtgctgcggctgctacag 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agtgatgcttgatccattagaagagagaaaaaaaaaaaaaatgtgctgcggctgctacag 481

                                                                       
Query: 405 tggagaggcctgaccatgccgagatttgggaaacttaagagacctgggatactggttcgt 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggagaggcctgaccatgccgagatttgggaaacttaagagacctgggatactggttcgt 541

                                                                       
Query: 465 ttagtggaaggcacagcacacacctctcactccggttctcgctggacctggacttggact 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttagtggaaggcacagcacacacctctcactccggttctcgctggacctggacttggact 601

                                                                       
Query: 525 tggacctggacctgnggcagaggcagaggcagagctccagccctgctggagctctcccaa 584
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tggacctggacctggggcagaggcagaggcagagctccagccctgctggagctctcccaa 661

                                                                       
Query: 585 ttgctccacaccctgtgtcctgtaaactccgacttctggggaaaaggattttaacacaaa 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ttgctccacaccctgtgtcctgtaaactccgacttctggggaaaaggattttaacacaaa 721

                                                                       
Query: 645 gaatgcgaatgcacactgcanattgacccatagtatctcatattgatgccagttgacatc 704
           |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct: 722 gaatgcgaatgcacactgcaaattgacccaaagtatctcaaattgatgccagttgacatc 781

                                                                       
Query: 705 aattaacggaggtcgctttttgagtgccttttctcacaatagtgtttgtctcgcaataaa 764
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 782 aattaacggaggtcgctttttgagtgccttttctcacaatagtg-ttgtctcgcaataaa 840

                                                                       
Query: 765 acggagttggctactgcttcttgcgaaactcggagatcctactgattattcatatcattg 824
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 acggagttgcttactgcttcttgcgaaactcggagatcctactgattattcatatcattg 900

                                                         
Query: 825 agcgggaaaatttcaggcgccgttcgtttaccccttacttgcccct 870
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 901 agcgggaaaatttcaggcgccgttcgtttacccctcacttgcccct 946


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,849
Number of Sequences: 1807
Number of extensions: 13849
Number of successful extensions: 364
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)