BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA11FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1380 0.0
>3x_Contig1718
Length = 19496
Score = 1380 bits (696), Expect = 0.0
Identities = 721/728 (99%), Gaps = 1/728 (0%)
Strand = Plus / Minus
Query: 88 tggattattacctggggtaagaccttccaagataaagaaataaagtagaaaacatagaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 tggattattacctggggtaagaccttccaagataaagaaataaagtagaaaacatagaac 9734
Query: 148 gcatcgaggtctatcaatacagtgtattatgtggtatattatgaagtaataggtttctga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 gcatcgaggtctatcaatacagtgtattatgtggtatattatgaagtaataggtttctga 9674
Query: 208 tggaatgattcctgact-ggttaatattatacatgcgaaatactgatctatttgatctaa 266
|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 tggaatgatttctgatttggttaatattatacatgcgaaatactgatctatttgatctaa 9614
Query: 267 gattgttatatagaaaagaagttaattcaattgtttatagtggaagtttttcgaactgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gattgttatatagaaaagaagttaattcaattgtttatagtggaagtttttcgaactgct 9554
Query: 327 ctaaaaaagacgggaaataaaaccaaaagagagaactatgcgactttatttttgaacttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 ctaaaaaagacgggaaataaaaccaaaagagagaactatgcgactttatttttgaacttc 9494
Query: 387 gttgttcttaatttggttttagttttaatatgatattaatatgcatgaatttccgtgtat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 gttgttcttaatttggttttagttttaatatgatattaatatgcatgaatttccgtgtat 9434
Query: 447 agcttagaatctacgtccaccaccgaacccaccacgggaaccgccacgagaaccaccgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433 agcttagaatctacgtccaccaccgaacccaccacgggaaccgccacgagaaccaccgaa 9374
Query: 507 tccacctctggatccacctctagaaccaccacgagagccaccgctgaatccaccacgacc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 tccacctctggatccacctctagaaccaccacgagagccaccgctgaatccaccacgacc 9314
Query: 567 accgctgaatccaccacgagagccaccgaatccaccacgagagccaccacgaccacctcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 accgctgaatccaccacgagagccaccgaatccaccacgagagccaccacgaccacctcc 9254
Query: 627 gaatccacctctagaaccgcctcttgcaccaccacggccaccaccgaattcaccacgacc 686
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9253 gaatccacctctagaaccgcctcttgcaccaccacggccaccaccgaatccaccacgacc 9194
Query: 687 acctggggcaccagatctctttctctttggttttggtgggccagcaacctttggcttagg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9193 acctggggcaccagatctctttctctttggttttggtgggccagcaacctttggcttagg 9134
Query: 747 caagaatctctctattggtagtaacttatcaagagcaatgtagaacttggcaccttcgct 806
||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 9133 caagaatctctctataggtagtaacttatcaggagcaatgtagaacttgtcaccttcgct 9074
Query: 807 gaaacttt 814
||||||||
Sbjct: 9073 gaaacttt 9066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6664
Number of Sequences: 1807
Number of extensions: 6664
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)