BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA11RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1256 1602 0.0
>3x_Contig1256
Length = 6519
Score = 1602 bits (808), Expect = 0.0
Identities = 864/879 (98%), Gaps = 3/879 (0%)
Strand = Plus / Plus
Query: 49 accctgtagactttagtaatgggagcgagcttagaaggattaacgatgcaataaaaaatg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3295 accctgtagactttagtaatgggagcgagcttagaaggattaacgatgcaataaaaaatg 3354
Query: 109 aggcaattggatcgaatatctgcgatttaaagatcttggtcaataaagtagatatgataa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3355 aggcaattggatcgaatatctgcgatttaaagatcttggtcaataaagtagatatgataa 3414
Query: 169 ctccgacagagccaagggtatctgccaaaacatgaaggaagatacctcttatgttgtcat 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3415 ctccgacagagccaagggtatctgccaaaacatgaaggaagatacctctcatgttgtcat 3474
Query: 229 tagattcatgttcgccgtgagcatggccatggtcaaatgcacatagacctacaacgttta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3475 tagattcatgttcgccgtgagcatggccatggtcaaatgcacatagacctacaacgttta 3534
Query: 289 caagtaaccctaggatagaaactactaacaactcggtagttcctagtattgtgactggat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3535 caagtaaccctaggatagaaactactaacaactcggtagttcctagtattgtgactggat 3594
Query: 349 taaatattctttggaatgattcaatgaaaatttcaataacaattccaatcaacaagaccc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 taaatattctttggaatgattcaatgaaaatttcaataacaattccaatcaacaagaccc 3654
Query: 409 catttgtgaaacctgcaatagtctctaagtagcccaacgcaaaaggatacttgtcactag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 catttgtgaaacctgcaatagtctctaagtagcccaacgcaaaaggatacttgtcactag 3714
Query: 469 cggggtattttgaaagcacgccagccaataaaccgagaaatagagaagtacaatcgagag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 cggggtattttgaaagcacgccagccaataaaccgagaaatagagaagtacaatcgagag 3774
Query: 529 ccatgtgtagcgagtcagataataatcccaatgacctggatctaaaggaatatagaagct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 ccatgtgtagcgagtcagataataatcccaatgacctggatctaaaggaatatagaagct 3834
Query: 589 gaacaaacatgaatgctgaattaagtaatagaaaagaaaaaatggatttcgtctctttgt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 gaacaaacatgaatgctgaattaagtaatagaaaagaaaaaatggatttcgtctctttgt 3894
Query: 649 ttgtggctagactcataagaagtttactagtagttagaaattctttctcattctcaagaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 ttgtggctagactcataagaagtttactagtagttagaaattctttctcattctcaagaa 3954
Query: 709 gctctttagagtcatgagtatgcgagtgggtggatacggagtgactatgttcatgttcat 768
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3955 gctctttagagtcatgagtatgcgagtgggtggaaacggagtgactatgttcatgttcat 4014
Query: 769 gctcgtttagttggtgctgacaatgcttatcangattttcgtcctccttaggatgatacc 828
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4015 gctcgtttagttggtgctgacaatgcttatcaggattttcgtcctccttaggatgata-a 4073
Query: 829 ccctgattttcatatttcaatgaacttggaagttatgccacttattagaataaacacagc 888
|| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 4074 ccttgattttcatattccaatgaacttggaag-tatgccacttataagaataaacacagc 4132
Query: 889 cgtttagaagtcacctttttgaaagacttgaaattgcat 927
|||| ||||||| ||||||||| |||||||||||||
Sbjct: 4133 cgttaggaagtca-ctttttgaagagcttgaaattgcat 4170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6702
Number of Sequences: 1807
Number of extensions: 6702
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)