BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA12FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1342 0.0
>3x_Contig1728
Length = 20685
Score = 1342 bits (677), Expect = 0.0
Identities = 799/832 (96%), Gaps = 7/832 (0%)
Strand = Plus / Minus
Query: 86 ctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13568 ctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttg 13509
Query: 146 cggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatgcct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13508 cggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatgcct 13449
Query: 206 tatacgacttt-ggtacttgtttgacgcaggaaggatttacattgcttatggagttctct 264
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13448 tatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctct 13389
Query: 265 gtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcagga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13388 gtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcagga 13329
Query: 325 tgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttact 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13328 tgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttact 13269
Query: 385 tgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagccatgc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13268 tgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagccatgc 13209
Query: 445 atgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtgact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13208 atgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtgact 13149
Query: 505 tttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13148 tttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgt 13089
Query: 565 accaagtacttgcctatgaattatttgattgtgagccttatgatatctcggatcaatttt 624
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13088 accaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttt 13029
Query: 625 tgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13028 tgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctt 12969
Query: 685 tcttaactgagttagtgaccatggaaagttataactacaaggaagctaaagtcattttgg 744
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12968 tcttaactgagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttgg 12909
Query: 745 acctaccacagtttacgccagctgtctaccgggcccttaattctctgcc-atttttaaga 803
||||||||||||||||||||||||||||| | ||| ||||| ||||||| ||||||||||
Sbjct: 12908 acctaccacagtttacgccagctgtctacggtgccattaatcctctgccaatttttaaga 12849
Query: 804 acctgttctccga--ttttaactga-aaaatcgac-tttttggatcattggtggaaaagg 859
| |||||||||| ||||| |||| ||| ||||| |||||| ||||||| | || ||||
Sbjct: 12848 gcttgttctccgagtttttacctgataaattcgacttttttgtatcattgtttgataagg 12789
Query: 860 ttttgcaaa-tccctttcaaaataccatatcccttggaaatttgcttaattt 910
|| |||||| ||| | ||| | ||||||||| ||| |||||||||||||||
Sbjct: 12788 ttatgcaaagtccttctcagatcaccatatcctttgaaaatttgcttaattt 12737
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6736
Number of Sequences: 1807
Number of extensions: 6736
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)