BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZA12RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 1400 0.0
>3x_Contig1167
Length = 4801
Score = 1400 bits (706), Expect = 0.0
Identities = 747/754 (99%), Gaps = 5/754 (0%)
Strand = Plus / Plus
Query: 48 cctaaatatagcactgatagcctgttagcagcaactgcaagtaatactggagcttaatct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 cctaaatatagcactgatagcctgttagcagcaactgcaagtaatactggagcttaatct 937
Query: 108 tgtgctgtttttttgggggggtggtacttttcctgtattaacaggtctatagttctgttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 tgtgctgtttttttgggggggtggtacttttcctgtattaacaggtctatagttctgttc 997
Query: 168 agtatgaatgtgtatgaaatgatgattctgaaatattgaaataccttaaaatcatgaaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 agtatgaatgtgtatgaaatgatgattctgaaatattgaaataccttaaaatcatgaaat 1057
Query: 228 gacacacacaaagggatacaaaacaccaagtaaatcacgggaagtataagaagaaagggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 gacacacacaaagggatacaaaacaccaagtaaatcacgggaagtataagaagaaagggc 1117
Query: 288 aaacaaaaagcactgtctaatcaatacttaatacacaatatgtcttacgagagtgatgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 aaacaaaaagcactgtctaatcaatacttaatacacaatatgtcttacgagagtgatgat 1177
Query: 348 tccagtgacggtgaaccaatcacccatccaacccaagtttatcaaaggatctatgaaaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 tccagtgacggtgaaccaatcacccatccaacccaagtttatcaaaggatctatgaaaag 1237
Query: 408 gaggcagacagccatttgcaggaaaggtttgctcttgagagagaggcagatgcagccgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 gaggcagacagccatttgcaggaaaggtttgctcttgagagagaggcagatgcagccgaa 1297
Query: 468 aaggagtaccttaaagttgctgatgaatggaagaagaaacctacaccaaatctagagcaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 aaggagtaccttaaagttgctgatgaatggaagaagaaacctacaccaaatctagagcaa 1357
Query: 528 cgcatgaacgatctcagtgaccgttgtgaagagattaatgaaaatttgaacgatgccaat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 cgcatgaacgatctcagtgaccgttgtgaagagattaatgaaaatttgaacgatgccaat 1417
Query: 588 gaaagctggatcaactcctattctgttgctatgtactacaaggacaaagagagacgtgaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 gaaagctggatcaactcctattctgttgctatgtactacaaggacaaagagagacgtgaa 1477
Query: 648 ttggaagaagatagtgattgaatccgtgaatgaacgacttcaggtggaagcaatacgtaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 ttggaagaagatagtgattgaatccgtgaatgaacgacttcaggtggaagcaatacgtaa 1537
Query: 708 cgactttttgagcttgcttta-tgggttcgttctgattgagtatgcatatat-acacgc- 764
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 1538 cgactttttgagcttgctttagtgggttcgttctgattgagtatgcatatataacacgct 1597
Query: 765 tggatgtat-aatgttctaga-tttaacctttgc 796
|| |||||| | ||||||||| ||||||||||||
Sbjct: 1598 tgtatgtatcattgttctagattttaacctttgc 1631
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6730
Number of Sequences: 1807
Number of extensions: 6730
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)