BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB01RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1556 1429 0.0
>3x_Contig1556
Length = 10874
Score = 1429 bits (721), Expect = 0.0
Identities = 789/805 (98%), Gaps = 5/805 (0%)
Strand = Plus / Plus
Query: 48 ctactgaaaatgttcaagaaactggtaacaatgagacggaagtttcagaagctgttgctg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7498 ctactgaaaatgttcaagaaactggtaacaatgagacggaagtttcagaagctgttgctg 7557
Query: 108 gtgcggctgatgccaatgccggtgccaatgccgatgccaatccgatagtgacggttgatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7558 gtgcggctgatgccaatgccggtgccaatgccgatgccaatccgatagtgacggttgatc 7617
Query: 168 cagttaattctgaaagttctgacgttgggaacgttaccactgtgataacagaaaaacctg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7618 cagttaattctgaaagttctgacgttgggaacgttaccactgtgataacagaaaaacctg 7677
Query: 228 tttccgagaccattgcattcattggattcattcctcgtaatacgactgataatcagctac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 tttccgagaccattgcattcattggattcattcctcgtaatacgactgataatcagctac 7737
Query: 288 gtgaatatttcaaaggatttgatccacaagaaattgttgtatttaaaaatagaacttata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7738 gtgaatatttcaaaggatttgatccacaagaaattgttgtatttaaaaatagaacttata 7797
Query: 348 gacgtgggttcactttccatcgccatttcacagcagccttggtaacgttccccgatgcct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7798 gacgtgggttcactttccatcgccatttcacagcagccttggtaacgttccccgatgcct 7857
Query: 408 tcaggctaaacgatgcgaaacagtttgcaacacaagagaaatttatgggcaaacagataa 467
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7858 tcaggctaaacgatgcgaaacagtttgcaacacaagagaaatttaggggcaaacagataa 7917
Query: 468 acgtgaagaacgcatttatagaaaagattgaagaagtgcaaagggctttagagaagaagg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918 acgtgaagaacgcatttatagaaaagattgaagaagtgcaaagggctttagagaagaagg 7977
Query: 528 cgggtgctaacactaatggagagtccgcggaaggcaacaacgaaatcccagcagatgctg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7978 cgggtgctaacactaatggagagtccgcggaaggcaacaacgaaatcccagcagatgctg 8037
Query: 588 gggtaacaggagatgaacctgatacagctaatgctgttgcggcaattcctatcgagggaa 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8038 gggtaacaggagatgaacctgatacagctaatgctgttgcggcaattcctatcgaggg-a 8096
Query: 648 aatcctc-accacaagctgacggtaatgacggtgctgtgggtggagcccgaggccaatgt 706
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8097 aatcctcaaccacaagctgacggtaatgacggtgctgt-ggtggagcccgaggccaatgc 8155
Query: 707 cgaaccgcttatcgaccaggaagatggtgtgacagcattgcaggacaattcatttacttt 766
|||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 8156 cgaaccgcttatcgaccaggaagatggtgtgacagcatcgcaggacaatcca-ttactta 8214
Query: 767 att-aaatgcagagtctcaattagaatttcaacaacctgtggaacagttcgcaagctaat 825
||| ||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||
Sbjct: 8215 attcaaatgcagagtctcaattagaatctcaacaacctgtagaacaggtcgcagcctaat 8274
Query: 826 tcacatactactagcattactactt 850
||||||||||||||||||||||||
Sbjct: 8275 acacatactactagcattactactt 8299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6375
Number of Sequences: 1807
Number of extensions: 6375
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)