BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB02FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1524 0.0
>3x_Contig1763
Length = 22654
Score = 1524 bits (769), Expect = 0.0
Identities = 821/833 (98%), Gaps = 4/833 (0%)
Strand = Plus / Minus
Query: 86 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 10916
Query: 146 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10915 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 10856
Query: 206 cgtctcttttcggtattatgctatttccttttatttctccgttttgattggttttttttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 cgtctcttttcggtattatgctatttccttttatttctccgttttgattggttttttttt 10796
Query: 266 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10795 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 10736
Query: 326 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10735 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 10676
Query: 386 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10675 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 10616
Query: 446 cctaatcttttctcattttctgattctctcattttcactcagaaaaagaacaaatgaaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10615 cctaatcttttctcattttctgattctctcattttcactcagaaaaagaacaaatgaaaa 10556
Query: 506 taccgacagcacgcatcaccggttcctggcagtgtggtacaagaacctgcagttttcgaa 565
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 taccgacagcacgcagcaccggttcctggcagtgtggtacaagaacctgcagttttcgaa 10496
Query: 566 ttgtttttctgtgatcctttggttacccggggttgtgtttcgtacatgatgatacggtga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10495 ttgtttttctgtgatcctttggttacccggggttgtgtttcgtacatgatgatacggtga 10436
Query: 626 tcccggatctggaaataaaaaggggttcttgcccagttctagtcatgtgactgcgaatcg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10435 tcccggatctggaaataaaaaggggttcttgcccagttctagtcatgtgactgcgaatcg 10376
Query: 686 cagagatctgatagaaagaagaaaaaaaagagatcatttctatatcacgtngattgatgt 745
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10375 cagagatctgatagaaagaagaaaaaaaagagatcatttctatatcacgt-gattgatgt 10317
Query: 746 ttcaattccatcatggggttcaagtatcgttattgtcatcatccatagaagtcataaata 805
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10316 ttcaattccatcat-gggttcaagtatcgttattgtcatcat-catagaagtcataaata 10259
Query: 806 gagcatatatactggttaggcgaacggaggttaagtttatttactcgctctcatacgatc 865
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10258 gagcatatatactgtttaggcgaacggaggttaagtttatttactcgctctcatacgatc 10199
Query: 866 tagctctttgtacacacgagctcgtagatcctttttaagtcca-gcatgaacc 917
||||||||||| ||||||||| |||||| ||| |||||| || |||||||||
Sbjct: 10198 tagctctttgtcaacacgagcttgtagattcttcttaagttcaggcatgaacc 10146
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,181
Number of Sequences: 1807
Number of extensions: 14181
Number of successful extensions: 234
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)