BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB03FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1229 0.0
>3x_Contig1448
Length = 10333
Score = 1229 bits (620), Expect = 0.0
Identities = 733/762 (96%), Gaps = 7/762 (0%)
Strand = Plus / Plus
Query: 87 cgcgaatgcgatgaacgcacctttgacaaagttttgggccataataacgcaggaccaata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8225 cgcgaatgcgatgaacgcacctttgacaaagttttgggccataataacgcaggaccaata 8284
Query: 147 ataataattggcggaaaacatagtatagaagaaaccgtatttgttcaagaccctctggtc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8285 ataataattggcggaaaacatagtatagaagaaaccgtatttgttcaagaccctctggtc 8344
Query: 207 accatataaaatagcagctggattgttgtgtaactgaatagatcgtttagcaaaagaaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8345 accatataaaatagcagctggattgttgtgtaactgaatagatcgtttagcaaaagaaat 8404
Query: 267 tgttctgagtgacacataaccgaggataccataaaccataatgatgaatagacaactcaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8405 tgttctgagtgacacataaccgaggataccataaaccataatgatgaatagacaactcaa 8464
Query: 327 tacaatgagagccggcgaatctctttgaataaattcccagaaacataaaatagtaatttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8465 tacaatgagagccggcgaatctctttgaataaattcccagaaacataaaatagtaatttg 8524
Query: 387 aatgaaaccaatgtaaatgtaacgcagaagagcacccttcaatatgatcttccaatgctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8525 aatgaaaccaatgtaaatgtaacgcagaagagcacccttcaatatgatcttccaatgctt 8584
Query: 447 tctgaaatcgatgaacctcgagtttttcaaccatccggctctgatacatagttcgacgac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8585 tctgaaatcgatgaacctcgagtttttcaaccatccggctctgatacatagttcgacgac 8644
Query: 507 atatttggcgcatatgatcaacccaaataggaaatacccacataatataaagaatgttaa 566
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8645 atatttggcgcaaatgatcaacccaaataggaaatacccacataatataaagaatgttaa 8704
Query: 567 cccagtagcaacgatagaagtaatttcgatgttggcactgntaccctaacgtttaatacc 626
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 8705 cccagtagcaacgatagaagtaatttcgatgttggcactgtaacctaaacgtttaatacc 8764
Query: 627 tctgaagattagaacgttggaattaccatacaagacttctgccgcacgcttatagatgtc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8765 tctgaagattagaacgttggaattaccatacaagacttctgccgcacgcttatagatgcg 8824
Query: 687 ggtactttccagatattctaggggatc-ttgaacc-aaacanaaattgtctttggagtta 744
|||||||||||||||||||| |||||| ||||||| ||||| |||||||||||| ||||
Sbjct: 8825 ggtactttccagatattcta-gggatctttgaaccaaaacagaaattgtctttgaggtta 8883
Query: 745 agtaatgaagtcgga-tgccaccatgggcttgaacataccatcctgaaatatttttgcat 803
||| || ||||||| |||||||| |||||||||||||||| |||||| |||||||||
Sbjct: 8884 agt-atagagtcggagtgccaccagtggcttgaacataccat-ctgaaaattttttgcat 8941
Query: 804 gaaaatgaacacggttacatcccatggacaacattaagtttt 845
|||| || |||||| | ||||||||||| |||| |||||||
Sbjct: 8942 gaaagtg-acacggatcaatcccatggaccacatcaagtttt 8982
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6385
Number of Sequences: 1807
Number of extensions: 6385
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)