BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZB03RM1.SCF screened BAC_end
         (965 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1448                                                         898   0.0  

>3x_Contig1448 
          Length = 10333

 Score =  898 bits (453), Expect = 0.0
 Identities = 543/563 (96%), Gaps = 8/563 (1%)
 Strand = Plus / Minus

                                                                        
Query: 47   tcttttctaatgggaagacagtctcgcaaacgggtgtcaaatgggccactgctgttatcg 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9210 tcttttctaatgggaagacagtctcgcaaacgggtgtcaaatgggccactgctgttatcg 9151

                                                                        
Query: 107  ctggtatcgggttgttgacttctgcattgctatccgccttcggtaactctaacgctgctt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9150 ctggtatcgggttgttgacttctgcattgctatccgccttcggtaactctaacgctgctt 9091

                                                                        
Query: 167  cacatgtggctgccaatactatgtcgcttttcttgtatttccaatcggtgactgtgttcg 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9090 cacatgtggctgccaatactatgtcgcttttcttgtatttccaatcggtgactgtgttcg 9031

                                                                        
Query: 227  ccatggaacatgttaacactgtgcctcctatcgccgctgcttggtccgaaaacttgatgt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9030 ccatggaacatgttaacactgtgcctcctatcgccgctgcttggtccgaaaacttgatgt 8971

                                                                        
Query: 287  ggtccatgggattgatccgtgtcactttcatgcaaaaaattttcagatggtatgttcaag 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8970 ggtccatgggattgatccgtgtcactttcatgcaaaaaattttcagatggtatgttcaag 8911

                                                                        
Query: 347  ccactggtggcactccgactctatacttaacctcaaagacaatttctgtttttggttcaa 406
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8910 ccactggtggcactccgactctatacttaacctcaaagacaatttctg-ttttggttcaa 8852

                                                                        
Query: 407  agatccctagaatatctggnaaagtacccgcatctattagcgtgcngcaaaaagtcttgt 466
            ||||||||||||||||||| ||||||||||||||||| ||||||| || | |||||||||
Sbjct: 8851 agatccctagaatatctgg-aaagtacccgcatctataagcgtgcggc-agaagtcttgt 8794

                                                                        
Query: 467  atgggtatttccaacgttcttaatcttcagaggtattaaacgtttaggttaca-tgccca 525
            || |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct: 8793 at-ggtaattccaacgttc-taatcttcagaggtattaaacgtttaggttacagtgccaa 8736

                                                                        
Query: 526  actcgaaattactnctattgttgctactgggtttaacattctttattttatgtgggtatt 585
              ||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||
Sbjct: 8735 catcgaaattacttctatcgttgctactggg-ttaacattctttatattatgtgggtatt 8677

                                   
Query: 586  tccctattggggttgatcctttg 608
            | |||||| ||||||||| ||||
Sbjct: 8676 t-cctatttgggttgatcatttg 8655


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,754
Number of Sequences: 1807
Number of extensions: 22754
Number of successful extensions: 327
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)