BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB04FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1235 0.0
>3x_Contig1468
Length = 9852
Score = 1235 bits (623), Expect = 0.0
Identities = 649/654 (99%), Gaps = 3/654 (0%)
Strand = Plus / Minus
Query: 87 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5098 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 5039
Query: 147 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5038 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 4979
Query: 207 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4978 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 4919
Query: 267 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4918 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 4859
Query: 327 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4858 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 4799
Query: 387 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4798 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 4739
Query: 447 gctccttccactgatccctttaaagacattactattttggaaggcttggatctcagcctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4738 gctccttccactgatccctttaaagacattactattttggaaggcttggatctcagcctg 4679
Query: 507 gacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaacctggat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4678 gacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaacctggat 4619
Query: 567 tccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcaggtcatcca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4618 tccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcaggtcatcca 4559
Query: 627 atagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaagaaaaca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4558 atagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaagaaaaca 4499
Query: 687 tccaccgcctttcttgcctatcanngaattagcaaccatttcaacctttctggt 740
||||||||||| ||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 4498 tccaccgccttccttgcctatca-ggaattagcaa-catttcaa-ctttctggt 4448
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)