BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB04RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1263 0.0
>3x_Contig1744
Length = 24119
Score = 1263 bits (637), Expect = 0.0
Identities = 702/717 (97%), Gaps = 5/717 (0%)
Strand = Plus / Minus
Query: 42 ctttaagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15916 ctttaagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtc 15857
Query: 102 ctactttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatgg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15856 ctactttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatgg 15797
Query: 162 atgagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15796 atgagttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttac 15737
Query: 222 tagcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15736 tagcagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgt 15677
Query: 282 tttacaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15676 tttacaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttga 15617
Query: 342 caaggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15616 caaggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaa 15557
Query: 402 ttatcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15556 ttatcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttg 15497
Query: 462 acgtcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15496 acgtcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtt 15437
Query: 522 tcacaaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15436 tcacaaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgt 15377
Query: 582 tgtctaaagacttgaaagatttgatagagcgtgtcggacgtatcgtatttggctct-act 640
||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct: 15376 tgtctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaact 15317
Query: 641 tcgaaaaag-acctattactgttaacgacattggatgtgcaagtgccattgctgcacttt 699
|||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 15316 acgaaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcac-tt 15258
Query: 700 ttaaagattgccg-aaagccttaacctgatgcaaacgcttgaaggaacaccagtttt 755
||||| ||||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 15257 ctaaaggatgccgtaaagcc-taacctgatgcaaacgcttgaagggacaccagtttt 15202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6542
Number of Sequences: 1807
Number of extensions: 6542
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)