BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB05FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1207 0.0
>3x_Contig1770
Length = 29267
Score = 1207 bits (609), Expect = 0.0
Identities = 691/705 (98%), Gaps = 10/705 (1%)
Strand = Plus / Minus
Query: 86 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 12137
Query: 146 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12136 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 12077
Query: 206 ttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 ttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 12017
Query: 266 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 11957
Query: 326 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 11897
Query: 386 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11896 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 11837
Query: 446 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11836 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 11777
Query: 506 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11776 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 11717
Query: 566 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaattatccgaag 625
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 11716 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaa-taaccgaag 11658
Query: 626 ataaactacgcgacgttactactacattgaaggatgtacagggaggatcttctcaatatc 685
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11657 aaaaactacgcgacgttactactacattgaaggatgtaca-ggaggatcttctcaatatc 11599
Query: 686 attagctcaaaggatgtatttattgggacatttcgttgcagtcgggacctttaacgtttt 745
|||||||||||||||||||| ||| ||||| |||||||||||| ||||| ||||||||||
Sbjct: 11598 attagctcaaaggatgtattaatt-ggaca-ttcgttgcagtc-ggacc-ttaacgtttt 11543
Query: 746 aaaagctaagacattcccattatcggttgacacgggcagttattt 790
|||||||||||| ||||| |||| |||||||| |||||||||||
Sbjct: 11542 -aaagctaagaca-tcccaatatc-gttgacac-ggcagttattt 11502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7117
Number of Sequences: 1807
Number of extensions: 7117
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)