BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB05RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1255 0.0
>3x_Contig1595
Length = 10795
Score = 1255 bits (633), Expect = 0.0
Identities = 785/821 (95%), Gaps = 11/821 (1%)
Strand = Plus / Plus
Query: 47 gcctcacattaaggacatcttccaatctatttctgccaagtctgacggcgaaccatgttg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4681 gcctcacattaaggacatcttccaatctatttctgccaagtctgacggcgaaccatgttg 4740
Query: 107 tgactgggttggtccagctgggtctggtcattacgtgaagatggtccacaacggtatcga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4741 tgactgggttggtccagctgggtctggtcattacgtgaagatggtccacaacggtatcga 4800
Query: 167 atacggtgacatgcaattgatcactgaagcttacgatatcatgaagagaattggtggatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4801 atacggtgacatgcaattgatcactgaagcttacgatatcatgaagagaattggtggatt 4860
Query: 227 caccgataaggaaatcggtgaagttttctcccaatggaacaagggtgtcttggattcctt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4861 caccgataaggaaatcggtgaagttttctcccaatggaacaagggtgtcttggattcctt 4920
Query: 287 cttggttgaaattacaagagacattttgctgtacgacgatgtcgatggtactcctctagt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4921 cttggttgaaattacaagagacattttgctgtacgacgatgtcgatggtactcctctagt 4980
Query: 347 ggaaaagatcttggattcagctggtcaaaagggtactggtaaatggactgccattaacgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 ggaaaagatcttggattcagctggtcaaaagggtactggtaaatggactgccattaacgc 5040
Query: 407 tttggatctaggtatgccagttactttgattggtgaagccgtgttcgctcgttgtttgtc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 tttggatctaggtatgccagttactttgattggtgaagccgtgttcgctcgttgtttgtc 5100
Query: 467 ctctttgaaggacgaaagagttagagcctccaagttgcttccaggcccctcatattccaa 526
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 5101 ctctttgaaggacgaaagagttagagcctccaagttgcttccagg-ccctcaaattccaa 5159
Query: 527 aggatgccgttaaggaaagatcacaattcgttgacgactgggaacaagctctttacgctt 586
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 5160 aggatgccgttaaggaaagacaacaattcgttgacgacttggaacaagctctttacgctt 5219
Query: 587 ccaagatcatctcttacgctcagggttt-atgttgatccgggaagctgggtagacttacg 645
|||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct: 5220 ccaagatcatctcttacgctcaaggtttcatgttgatccgtgaagctggtaagacttacg 5279
Query: 646 gctggggaggtggacaaccctggcattgctttgatgtggagaggntggttgtatcattca 705
||| || || || ||||||||| ||| ||||||||||||||||| ||||||||||| |||
Sbjct: 5280 gct-ggaagttgaacaaccctgccatcgctttgatgtggagagg-tggttgtatca-tca 5336
Query: 706 gaccggttttcttgggggaaattacaaaggcttattgagaaaacccag-attgggaaaat 764
|| | ||||||||||| |||||||||||||||||| |||||||||||| ||||| ||| |
Sbjct: 5337 gatccgttttcttgggtgaaattacaaaggcttatagagaaaacccagaattggaaaact 5396
Query: 765 tattattcaccaaatt-ttggctggatgccgccgaaaaggctcaaa-cggttggagaaag 822
||||||||| |||||| || ||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 5397 tattattcaacaaattcttcgct-gatgccgtcgaaaaggctcaaagcggttggagaaag 5455
Query: 823 acaattggttttggctggttttttacggtttcccaacccca 863
|| ||||| ||||||| |||| ||||||| |||||||||||
Sbjct: 5456 actattgg-tttggct-gtttcttacggtatcccaacccca 5494
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5772
Number of Sequences: 1807
Number of extensions: 5772
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)