BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1189 0.0
>3x_Contig1645
Length = 12736
Score = 1189 bits (600), Expect = 0.0
Identities = 642/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Plus
Query: 48 attactcgggtatcaatatttaaagtgttaaatggattgaagatataaggtatggtaaat 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10260 attactcgggtatcaatattcaaagtgttaaatggattgaagatataaggtatggtaaat 10319
Query: 108 ggtactcgtttgctaatgcatcaggatttgttgtaattgagaaattacgtagttaaataa 167
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct: 10320 ggtactcgtttgctaatgcagcaggatttgttgtaatagagaaattaggtagttaaataa 10379
Query: 168 aaagaacttctaacaaatgatttgcaactcgctgtcatgtttaatatttaggttaagatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10380 aaagaacttctaacaaatgatttgcaactcgctgtcatgtttaatatttaggtaaagatg 10439
Query: 228 gatttatctcatcaatatacttgaaaaacccacctttaacatctttgacatctttcaaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10440 gatttatctcatcaatatacttgaaaaacccacctttaacatctttgacatctttcaaat 10499
Query: 288 tgaatttatctttcaatagcctggttgcgagctgcgaatcatttccgtatctgcaaagca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10500 tgaatttatctttcaatagcctggttgcgagctgcgaatcatttccgtatctgcaaagca 10559
Query: 348 ctaatacttcataatctgctgaaaggtggggtattttggattggagattattcagatctg 407
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10560 ctaatacttcagaatctgctgaaaggtggggtattttggattggagattattcagatctg 10619
Query: 408 ctggtaaatctctaagttcattcacagtgatattatgtgaatctggtaggtgtgatatgg 467
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10620 ctggtaaatctctaagttcattcacagtgatattatgtgaatttggtaggtgtgatatgg 10679
Query: 468 aataatgaagacttggtctgacatcaagcaaaacgtaaggcttggtctatgatgaattcc 527
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10680 aataatgaagacttggtctgacatcaagcaaaacgtaaggcttggtctttgatgaattcc 10739
Query: 528 agtaatcccgttcaaatttatgcacatcgattctttcgtcctcagttaaaacactatagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10740 agtaatcccgttcaaatttatgcacatcgattctttcgtcctcagttaaaacactatagt 10799
Query: 588 tacggctaccgccgaatgattgataatttattttgcctgattcgatagattctcttgtta 647
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10800 tacggctaccgcagaatgattgataatttattttgcctgattcgatagattctcttgtta 10859
Query: 648 cagtccctgcctgttccacatgctggacattctaccctnctacccctcattttga 702
|||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 10860 cagt-cctgcctgttccacaagctggacaatctaccctcctacccctcattttga 10913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7202
Number of Sequences: 1807
Number of extensions: 7202
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)