BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZB07RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1454                                                        1350   0.0  

>3x_Contig1454 
          Length = 9243

 Score = 1350 bits (681), Expect = 0.0
 Identities = 731/744 (98%), Gaps = 3/744 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   atcaagaagtagcttctgtacatcttcaatttcgttattgagtttcgcatcatatttgac 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3201 atcaagaagtagcttctgtacatcttcaatttcgttattgagtttcgcatcatatttgac 3260

                                                                        
Query: 108  attaacaaatggtttgaacgtgatagaatcgaacgctaagaagatctgtaagtttttata 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3261 attaacaaatggtttgaacgtgatagaatcgaacgctaagaagatctgtaagtttttata 3320

                                                                        
Query: 168  cccaaatatttgttcagaatcaccataaataggatacgtgaaggttggcttgaagttaac 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3321 cccaaatatttgttcagaatcaccataaataggatacgtgaaggttggcttgaagttaac 3380

                                                                        
Query: 228  tgccccattttcatcaactaaggagagattaagggcttcattagaagatacagtccatgt 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3381 tgccccattttcatcaactaaggagagattaagggcttcattagaagatacagtccatgt 3440

                                                                        
Query: 288  ttcaggtcttaaatcaacagccatattttcagagagtcaatgcttctcagttgagtacag 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3441 ttcaggtcttaaatcaacagccatattttcagagagtcaatgcttctcagttgagtacag 3500

                                                                        
Query: 348  ctttccctgttcctattattgctttcgcgtctcttgattataatctggcattttatttca 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3501 ctttccctgttcctattattgctttcgcgtctcttgattataatctggcattttatttca 3560

                                                                        
Query: 408  gcttttttctttatttccttcataatttaagaaggtaaagcttgaccacttcataatggt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3561 gcttttttctttatttccttcataatttaagaaggtaaagcttgaccacttcataatggt 3620

                                                                        
Query: 468  agagtagttgggcatagaggcaaagcaattaaaatagatatataatcaaacctcgtgtca 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3621 agagtagttgggcatagaggcaaagcaattaaaatagatatataatcaaacctcgtgtca 3680

                                                                        
Query: 528  actgttgattactatgttccagaatttatttggattactttaggtatatttccagtgaaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3681 actgttgattactatgttccagaatttatttggattactttaggtatatttccagtgaaa 3740

                                                                        
Query: 588  tctgctacgatatagagtaaacgtctgacatanattggtagatttttgacggttgccatg 647
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3741 tctgctacgatatagagtaaacgtctgacataaattggtagatttttgacggttgccatg 3800

                                                                        
Query: 648  aagatattcggtgttgcaggctttcgcgagtctggtcaatatgatcttgcctcgaacaag 707
            |||| |||||||||||| | |||  |||||||||||||||||||||||||||||||||||
Sbjct: 3801 aagaaattcggtgttgcggccttcggcgagtctggtcaatatgatcttgcctcgaacaag 3860

                                                                        
Query: 708  ttaggctcacagaatattgaattgaatgagcagctttcaattctttcaagttaaaactat 767
            |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| 
Sbjct: 3861 ttaggctcacagaataatgaattgaatgagcagctttcaa-tctttcaagtt-aaactag 3918

                                    
Query: 768  gggaatttgcccaggccacataat 791
             |||||||| |||||| |||||||
Sbjct: 3919 tggaatttg-ccaggcaacataat 3941


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8672
Number of Sequences: 1807
Number of extensions: 8672
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)