BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 862 0.0
3x_Contig244 254 3e-67
>3x_Contig1068
Length = 5568
Score = 862 bits (435), Expect = 0.0
Identities = 435/435 (100%)
Strand = Plus / Minus
Query: 95 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 376
Query: 155 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 316
Query: 215 cttaaatattatttcctcaagcaacaagacgtatatttactacttccagaacacagttgt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttaaatattatttcctcaagcaacaagacgtatatttactacttccagaacacagttgt 256
Query: 275 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 196
Query: 335 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 136
Query: 395 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 76
Query: 455 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 16
Query: 515 gaacgtattcagaga 529
|||||||||||||||
Sbjct: 15 gaacgtattcagaga 1
>3x_Contig244
Length = 1487
Score = 254 bits (128), Expect = 3e-67
Identities = 263/302 (87%), Gaps = 7/302 (2%)
Strand = Plus / Minus
Query: 627 ctcatcctcttatataggatagaccaatanaattttcagttnttccctgttactaanatt 686
|||| ||||| |||||||| |||||||| ||||||||||| |||||||||||||| |||
Sbjct: 1271 ctcagcctctgatataggaatgaccaataaaattttcagtttttccctgttactaaaatt 1212
Query: 687 tcagaagcgacatttcgata-gaca-cagtgggaaatactagagtttaaaccgtgttagg 744
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 1211 caagaagcgacatttcgaaaagacaacagtgggaaatactagagtttaaaccgtgttagg 1152
Query: 745 gttgataaagtggtctcaaaac-gatttataccagtaaactaggctttcaacgtttattt 803
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct: 1151 gttgataaagtggtctcaaaacagatttataccagtaaactaggcattcaacgttaatt- 1093
Query: 804 cggggggatttnacccttatttgaaaactcgtcgcctacggaaaacgacagccgaacgcn 863
| ||||||| ||| | || |||| ||||||||||||| |||||||| |||| |||
Sbjct: 1092 -cgtgggatttcaccataatctgaacactcgtcgcctacagaaaacgaacgccgtacggc 1034
Query: 864 atcagcaac-attttgccttggattataccctaacgtgac-ttgttcaccaattttttgg 921
||||||||| || |||||||| || ||||||| |||||| |||||||||| ||| ||||
Sbjct: 1033 atcagcaacaatcttgccttgtatattaccctaccgtgactttgttcaccagtttcttgg 974
Query: 922 cc 923
||
Sbjct: 973 cc 972
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6569
Number of Sequences: 1807
Number of extensions: 6569
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)