BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB08RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 1308 0.0
>3x_Contig1252
Length = 5616
Score = 1308 bits (660), Expect = 0.0
Identities = 720/737 (97%), Gaps = 3/737 (0%)
Strand = Plus / Plus
Query: 48 catcaattcaggaccaattaaggaat-cacaatatcaaaacctttaccaaatcacttcta 106
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4147 catcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcacttcta 4206
Query: 107 cagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagctcg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4207 cagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagctcg 4266
Query: 167 aatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctggcag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 aatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctggcag 4326
Query: 227 actttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggttttatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4327 actttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggttttatc 4386
Query: 287 atagtatcggatctttactctacaattttctatcttcggatgactttaacgtagagaatg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 atagtatcggatctttactctacaattttctatcttcggatgactttaacgtagagaatg 4446
Query: 347 gtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtggacg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 gtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtggacg 4506
Query: 407 attacctctcagaacagactccaaattatgaccccagaattttgttcactgatataagtg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 attacctctcagaacagactccaaattatgaccccagaattttgttcactgatataagtg 4566
Query: 467 aatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaaaac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 aatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaaaac 4626
Query: 527 ttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctgcag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4627 ttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctgcag 4686
Query: 587 aggatattagctcacaa-gaaccaatctcgataactctgctatcggtatatgttggacat 645
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687 aggatattagctcacaaggaaccaatctcgataactctgctatcggtatatgttggacat 4746
Query: 646 antccgaagatgattgtgtattttgcaagatgcccaaagattatgatgttttatcatact 705
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4747 atccggaagatgattgtgtattttgcaagatgcccaaagattatgatgttttatcatact 4806
Query: 706 ttgnatttgncgaacgcaatggtgttttctatcattttacccttcgatgacaaaaccaag 765
||| ||||| ||||||||||| || ||||||||| |||| | | ||||||||||| |||
Sbjct: 4807 ttgtatttgtcgaacgcaatgttg-tttctatcaatttagcttcggatgacaaaacaaag 4865
Query: 766 gatgttggatttcaacc 782
||||| | |||||||||
Sbjct: 4866 gatgtagaatttcaacc 4882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6985
Number of Sequences: 1807
Number of extensions: 6985
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)