BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB09FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 1154 0.0
>3x_Contig1295
Length = 7117
Score = 1154 bits (582), Expect = 0.0
Identities = 642/656 (97%), Gaps = 5/656 (0%)
Strand = Plus / Plus
Query: 88 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 350
Query: 148 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 410
Query: 208 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 470
Query: 268 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 530
Query: 328 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 590
Query: 388 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 650
Query: 448 tttttttgacactttgaaccttttagctgtttttattcgcgtaaatgtatattattaaca 507
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaaca 710
Query: 508 nagtgatcgaaactaanatatcagcaggatagtcaaaaatagaaggccgagttaaaggtc 567
||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 711 aagtgatcgaaactaaaatatcagcaggaaagtcaaaaatagaaggccgagttaagggtc 770
Query: 568 ctacatt-acatcaacgtagtaagattttcttagtaaactcac-aattccgccccagt-a 624
||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||| |
Sbjct: 771 ctacattaacatcaacgtagtaagattttcttagt-aactcacaaattccggcccagtaa 829
Query: 625 gtagatatatatatgtacgntcttttttcggcattgtagagcatctgctgtaagcttatc 684
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtagatatatatatgtacg-tcttttttcggcattgtagagcatctgctgtaagcttatc 888
Query: 685 agctgtcattactttctgctcggtcagcattgatgaaaaacccgctcatatttcat 740
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 889 agctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcat 944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6978
Number of Sequences: 1807
Number of extensions: 6978
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)