BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB09RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1334 0.0
>3x_Contig1645
Length = 12736
Score = 1334 bits (673), Expect = 0.0
Identities = 794/827 (96%), Gaps = 6/827 (0%)
Strand = Plus / Plus
Query: 47 attactcgggtatcaatattcaaagtgttaaatggattgaagatataaggtatggtaaat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260 attactcgggtatcaatattcaaagtgttaaatggattgaagatataaggtatggtaaat 10319
Query: 107 ggtactcgtttgctaatgcagcaggatttgttgtaatagagaaattaggtagttaaataa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10320 ggtactcgtttgctaatgcagcaggatttgttgtaatagagaaattaggtagttaaataa 10379
Query: 167 aaagaacttctaacaaatgatttgcaactcgctgtcatgtttaatatttatgtaaagatg 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10380 aaagaacttctaacaaatgatttgcaactcgctgtcatgtttaatatttaggtaaagatg 10439
Query: 227 gatttatctcatcaatatacttgaaaaacccacctttaacatctttgacatctttcaaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10440 gatttatctcatcaatatacttgaaaaacccacctttaacatctttgacatctttcaaat 10499
Query: 287 tgaatttatctttcaatagcctggttgcgagctgcgaatcatttccgtatctgcaaagca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10500 tgaatttatctttcaatagcctggttgcgagctgcgaatcatttccgtatctgcaaagca 10559
Query: 347 ctaatacttcagaatctgctgaaaggtggggtattttggattggagattattcagatctg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10560 ctaatacttcagaatctgctgaaaggtggggtattttggattggagattattcagatctg 10619
Query: 407 ctggtaaatctctaagttcattcacagtgatattatgtgaatttggtaggtgtgatatgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10620 ctggtaaatctctaagttcattcacagtgatattatgtgaatttggtaggtgtgatatgg 10679
Query: 467 aataatgaagacttggtctgacatcaagcaaaacgtaaggcttggtctttgatgaattcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10680 aataatgaagacttggtctgacatcaagcaaaacgtaaggcttggtctttgatgaattcc 10739
Query: 527 agtaatcccgttcatatttatgcacatcgattctttcgtcctcagttaaaacactatagt 586
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10740 agtaatcccgttcaaatttatgcacatcgattctttcgtcctcagttaaaacactatagt 10799
Query: 587 tacagctaccgcagaatgatttgat-atttattttgcctgattcgatagattctcttgtt 645
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10800 tacggctaccgcagaatga-ttgataatttattttgcctgattcgatagattctcttgtt 10858
Query: 646 acagtcctgcctgtttcacaagctggacaatctaccctnctacccctcattttgaactta 705
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10859 acagtcctgcctgttccacaagctggacaatctaccctcctacccctcattttgaactta 10918
Query: 706 cngagagtctgatcagggtaaccaggattcttgagtagaatcgctttgaaattctttctg 765
| |||||||||||||||| |||||| || || ||||||| || ||||| |||| ||||
Sbjct: 10919 cggagagtctgatcagggaaaccagaatactgaagtagaaacggcttgaagttctctctg 10978
Query: 766 ttgtacacgccaagtaatagctttaatggctttaacc-ccattggcaaaccatcatgccc 824
|||||||||||||||||||||||||| |||| |||| |||||| || |||| || ||||
Sbjct: 10979 gtgtacacgccaagtaatagctttaat-gcttcaaccaccattgccacaccaacaagccc 11037
Query: 825 -acgcaaggttctaagaaacccacctttttggcaggatgaccccgaa 870
||||| ||| |||||| | ||||||| ||||||||||||| |||||
Sbjct: 11038 aacgcagggtcctaagaca-ccaccttcttggcaggatgacaccgaa 11083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7710
Number of Sequences: 1807
Number of extensions: 7710
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)