BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB10FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig190 565 e-161
>3x_Contig190
Length = 941
Score = 565 bits (285), Expect = e-161
Identities = 341/355 (96%), Gaps = 4/355 (1%)
Strand = Plus / Plus
Query: 359 cgttcatatccatatacatgttggcaaagccgaactgcgacggtggtaccatgtaagcca 418
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 2 cgttcatatccatatacatgttggcaaagc-gaactgcgacggtggtac-atgtaagcca 59
Query: 419 tgttgcccatgtcttggccaggctcttgtggaggatacatagatcctgaatagtctctgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tgttgcccatgtcttggccaggctcttgtggaggatacatagatcctgaatagtctctgg 119
Query: 479 cgtccattaagcggngcttctttctcgaaaaaggtctatgatatttttagaatgaacttt 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cgtccattaagcggggcttctttctcgaaaaaggtctatgatatttttagaatgaacttt 179
Query: 539 caagctgaaatgcaggtatgatctgtttcttctcatgtggnagttcatctgtataatggt 598
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 180 caagctgaaatgcaggtatgatctgtttcttctcatgtggaggttcatctgtataatggt 239
Query: 599 ccgtctatcagcgctacatgatgtaattcaatatttcattatggaaatgagttgctgttc 658
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct: 240 ccgtctatcagcgctacatgatgtaatcaaatatttcaatatggaaatgagttgctg-tc 298
Query: 659 cgttcgg-atgattttaaactgagcttgacaaacggcgcactgaagcttccaatt 712
||||||| ||||| | |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 299 cgttcggaatgatataaaactgagcttgacgaacggcgcactgaagctaccaatt 353
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6171
Number of Sequences: 1807
Number of extensions: 6171
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)