BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB10RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1307 967 0.0
>3x_Contig1307
Length = 7280
Score = 967 bits (488), Expect = 0.0
Identities = 692/733 (94%), Gaps = 24/733 (3%)
Strand = Plus / Minus
Query: 46 tagaactttaccaatatacaattaccacatgataaagaggatcttccagcatctacacag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6017 tagaactttaccaatatacaattaccacatgataaagaggatcttccagcatctacacag 5958
Query: 106 agttcataatcatatggataccaaccgtatggatgctagcaatcttgctattgttttctc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5957 agttcataatcatatggataccaaccgtatggatgctagcaatcttgctattgttttctc 5898
Query: 166 aatgagtttcatcaatcaagatgatctggctaacagtatgggaccaagtttatgtttatt 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5897 aatgagtttcatcaatcaagatgatctggctaacagtatgggaccaagtttaggtttatt 5838
Query: 226 gcagagcctactgcaaaagttcataagatatccagatacctatttcgtctatgaatagac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5837 gcagagcctactgcaaaagttcataagatatccagatacctatttcgtctatgaatagac 5778
Query: 286 tataataatatataataactactgcgtaatatataataacattgtttatttacatgataa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5777 tataataatatataataactactgcgtaatatataataacattgtttatttacatgataa 5718
Query: 346 attcgagatttagtgacaacaatcaggtgtgtgaaaagatctctacaaaggtacttctgg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5717 attcgagatttagtgacaacaatcaggtgtgtgaaaagatctctacaaaggtacttctgg 5658
Query: 406 tgattatttcttgcgaacaatttttattctttggttttctttttcttttttggccaaatc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5657 tgattatttcttgcgaacaatttttattctttggttttctttttcttttttggccaaatc 5598
Query: 466 cttca-tttatcatcttgttcttt-atcatagctctc-tctcagctgggt-tttcgcttt 521
||||| |||||||||||||||||| |||||||||||| |||||||| ||| |||||||||
Sbjct: 5597 cttcattttatcatcttgttctttcatcatagctctcttctcagcttggtctttcgcttt 5538
Query: 522 ctg-atattc-ctctaaaac-ttcg-acaca-ctttctgaggccctt-gttttcttgtgc 575
||| |||||| ||||||||| |||| ||||| |||||||||| |||| ||||||| ||||
Sbjct: 5537 ctgaatattctctctaaaactttcgaacacacctttctgagggccttggttttctggtgc 5478
Query: 576 tgga-gggttaccacttcg---ttatttaaaaattttc-agca-tttgattccttag-ag 628
|||| || ||||||||||| |||| |||||||||| |||| ||||||||||||| ||
Sbjct: 5477 tggatggtttaccacttcggctatattcaaaaattttctagcagtttgattccttagaag 5418
Query: 629 taaagtttg-atcattg-acaaacaccgtttactgccaaatttaaa--cacccctgctga 684
||||||||| ||||||| ||||||||||||||||||||||| |||| || ||||||||
Sbjct: 5417 taaagtttgaatcattgaacaaacaccgtttactgccaaatataaaacaacacctgctga 5358
Query: 685 taga-tcatgggtaacagttttggtttaaatggggcaattagtgaaaaccttttttattt 743
|||| |||| |||||||| | ||||| ||||||| ||| ||||||||||||||| | ||
Sbjct: 5357 tagattcat-ggtaacaggtatggttaaaatgggcaaataagtgaaaacctttttca-tt 5300
Query: 744 tgtggagaaaatt 756
|||||||||||||
Sbjct: 5299 tgtggagaaaatt 5287
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9296
Number of Sequences: 1807
Number of extensions: 9296
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)