BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB11FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1598 0.0
>3x_Contig1584
Length = 9710
Score = 1598 bits (806), Expect = 0.0
Identities = 836/844 (99%), Gaps = 2/844 (0%)
Strand = Plus / Plus
Query: 86 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 4044
Query: 146 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4045 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 4104
Query: 206 agctactatcatttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 agctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 4164
Query: 266 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 4224
Query: 326 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 4284
Query: 386 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 4344
Query: 446 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 4404
Query: 506 cttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatatgtatata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 cttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatatgtatata 4464
Query: 566 tatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgcatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 tatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgcatt 4524
Query: 626 ttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacattggaagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 ttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacattggaagc 4584
Query: 686 gagagatggtcgttcataatcctaacatttggcattgggtcgantagaactgtattgact 745
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 4585 gagagatggtcgttcataatcctaacaattggcattgggtcgataagaactgtattgact 4644
Query: 746 gggcaaagaaatacttccaagaaaaattggttggtttgactaccggagaatcaacagatg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 gggcaaagaaatacttccaagaaaaattggttggtttgactaccggagaatcaacagatg 4704
Query: 806 aactgtatgcagaaattac-aagctatcatcattagaaggtgattgcgaggtgaaccaac 864
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 aactgtatgcagaaattacaaagctatcatcattagaaggtgattgcgaggtgaaccaac 4764
Query: 865 ggnagggtaaagtgatttctttatttgatttgaaattgaatgtt-gtattgcgggtcatg 923
|| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4765 ggaagggtaaggtgatttctttatttgatttgaaattgaatgttggtattgcgggtcatg 4824
Query: 924 tggg 927
||||
Sbjct: 4825 tggg 4828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7582
Number of Sequences: 1807
Number of extensions: 7582
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)