BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZB11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1655 0.0
>3x_Contig1654
Length = 17174
Score = 1655 bits (835), Expect = 0.0
Identities = 875/887 (98%), Gaps = 2/887 (0%)
Strand = Plus / Minus
Query: 47 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 2707
Query: 107 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 2647
Query: 167 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 2587
Query: 227 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 2527
Query: 287 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 2467
Query: 347 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 2407
Query: 407 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 2347
Query: 467 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 2287
Query: 527 gttaaaatcaacctgaaccgataaaatagtttaaaaacttgatacttaagtgtatacata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gttaaaatcaacctgaaccgataaaatagtttaaaaacttgatacttaagtgtatacata 2227
Query: 587 tatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatattat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 tatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatattat 2167
Query: 647 tgaatcaatggtcttcctttagatgagcttcgtactgctctagcgatatcaattcatcgg 706
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2166 tgaatcaatggtcttcctttagatgagcttcgtactgctctagcgataacaattcatcgg 2107
Query: 707 attgtnaatctgcctcatcgttaattntaatcttgatgatccaaccttcaccagctgggt 766
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2106 attgtaaatctgcctcatcgttaattttaatcttgatgatccaaccttcaccagctgggt 2047
Query: 767 cgctgntgatcaattgtggcgagtcagacaaagcttcgttcacttncacgacagtaccag 826
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2046 cgctgttgatcaattgtggcgagtcagacaaagcttcgttcacttccacgacagtaccag 1987
Query: 827 cgacaggagtgtaaatttcagatgcagacttgacggatttcacagaaccaaacgaatcgg 886
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1986 cgacaggagagtaaatttcagatgcagacttgacggattcaacagaaccaaacgaatcgc 1927
Query: 887 cagcctctaattcggtatcaacaatctggcatttcgnacgtaagtgg 933
|||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct: 1926 cagcctctaattcggtatcaac-atctggcaattcg-acgtaagtgg 1882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6565
Number of Sequences: 1807
Number of extensions: 6565
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)