BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZB12RM1.SCF screened BAC_end
         (974 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1794                                                        1110   0.0  

>3x_Contig1794 
          Length = 36744

 Score = 1110 bits (560), Expect = 0.0
 Identities = 609/622 (97%), Gaps = 3/622 (0%)
 Strand = Plus / Plus

                                                                         
Query: 46    cttgtttctcattttcgaacttcgcccagtagggataatctgtttcaaactccaaatcca 105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23190 cttgtttctcattttcgaacttcgcccagtagggataatctgtttcaaactccaaatcca 23249

                                                                         
Query: 106   aacctttgtatctccaagcatgtagatatagctctaacgattctggagttggatcttttg 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23250 aacctttgtatctccaagcatgtagatatagctctaacgattctggagttggatcttttg 23309

                                                                         
Query: 166   gcatttcttcgtcgcattcaggacatcgttcttgattttcattcaattgatcccatacat 225
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 23310 gcatttcttcgtcgcattcaggacatcgttcttgattttcattcaattgatcccagacat 23369

                                                                         
Query: 226   catccagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttgag 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23370 catccagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttgag 23429

                                                                         
Query: 286   tccaatctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaaggt 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23430 tccaatctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaaggt 23489

                                                                         
Query: 346   tataaaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttgat 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23490 tataaaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttgat 23549

                                                                         
Query: 406   gtgttcttcccgtgaaaggtttgcatactacaattgattgatcagttacggcatcgtatt 465
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23550 gtgttcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtatt 23609

                                                                         
Query: 466   ccattaattcaaactcagtatgtgcgtctttcaaa-gggataatggctctgatttatttt 524
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 23610 ccattaattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaattt 23669

                                                                         
Query: 525   tc-agtcacaggtttagattggggatttatcaactgcagtttcagggaaattttcctttt 583
             || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23670 tcaagtcacaggtatagattggggatttatcaactgcagtttca-ggaaattttcctttt 23728

                                                                         
Query: 584   actctagctagattatatttcttcttataacgatctcttatcttanattgnactctgtta 643
             ||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||||||||
Sbjct: 23729 actctagctagataatatttcttcatatcacgatctcttatcttagattgaactctgtta 23788

                                   
Query: 644   gcatccatgggatttttggcca 665
             ||||| ||||||||||||||||
Sbjct: 23789 gcatcgatgggatttttggcca 23810


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,558
Number of Sequences: 1807
Number of extensions: 18558
Number of successful extensions: 2605
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)