BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC01FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1439 0.0
>3x_Contig1749
Length = 22923
Score = 1439 bits (726), Expect = 0.0
Identities = 772/782 (98%), Gaps = 4/782 (0%)
Strand = Plus / Plus
Query: 86 cgatcagtgacgattcttcgactacaaaaccctcgacttacgaaacaaacaacaacaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3737 cgatcagtgacgattcttcgactacaaaaccctcgacttacgaaacaaacaacaacaaaa 3796
Query: 146 gacaacactagaaaacatttaattaaaagtaagtgtttgaagtgctgatgtttggttcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797 gacaacactagaaaacatttaattaaaagtaagtgtttgaagtgctgatgtttggttcat 3856
Query: 206 atagttgaatgtttaacttttttccaaaaaattttcaaaaaggttacccgacttcttaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857 atagttgaatgtttaacttttttccaaaaaattttcaaaaaggttacccgacttcttaac 3916
Query: 266 gacctgaaatttagggctgcaacggtcagcttatcataatgtacttgatgatgaattgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3917 gacctgaaatttagggctgcaacggtcagcttatcataatgtacttgatgatgaattgaa 3976
Query: 326 gaatagcgaacggtaaggtagtaagaaccgaatcgggttaggtactttgaacaaaggatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 gaatagcgaacggtaaggtagtaagaaccgaatcgggttaggtactttgaacaaaggatt 4036
Query: 386 ccgacaacaaaaggcagtacaaatttcactggaggataaaaaatacctttccccccctta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 ccgacaacaaaaggcagtacaaatttcactggaggataaaaaatacctttccccccctta 4096
Query: 446 ttcattgaacagctagaagattatctttccaaaatgagcgcctcatactgggattcgagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 ttcattgaacagctagaagattatctttccaaaatgagcgcctcatactgggattcgagt 4156
Query: 506 cagaggcacaagtggaagtatactagggaatccttggctaaggagaagcagaaactctgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157 cagaggcacaagtggaagtatactagggaatccttggctaaggagaagcagaaactctgg 4216
Query: 566 ctgttggaatgccaattattcccacaaggtttgaatgttacgattcacgattcgaaggcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 ctgttggaatgccaattattcccacaaggtttgaatgttacgattcacgattcgaaggcg 4276
Query: 626 aacaagcaggtgacgacaaacattcccgttacacagcgagatctgcattatgatcgagac 685
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4277 aacaagcaggtgacgacaaacattccggttacacagcgagatctgcattatgatcgagac 4336
Query: 686 tacaatttgaggatatactgctatttccttataatgaaagttgggcaggaggcttaatat 745
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 4337 tacaatttgaggatatactgctatttccttataatg-aagttgggcaggaggctcaatat 4395
Query: 746 acggcagtgtgcacttgttacagcacatgtttattttgagccgatttttggcttcgagct 805
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 4396 acggcagtgtgcacttgttacagcacatgttta-tttgagccgattttt-gcttcgagct 4453
Query: 806 agtgtcagggaagtgaacctgtatctttttattaccaactgcatttatttgggcttgcaa 865
||||||||||||||||||||||||||||| || |||| |||||| ||||| |||||||||
Sbjct: 4454 agtgtcagggaagtgaacctgtatcttttaatcaccacctgcatctattt-ggcttgcaa 4512
Query: 866 ag 867
||
Sbjct: 4513 ag 4514
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6326
Number of Sequences: 1807
Number of extensions: 6326
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)