BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC01RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 1126 0.0
>3x_Contig1516
Length = 8750
Score = 1126 bits (568), Expect = 0.0
Identities = 665/684 (97%), Gaps = 10/684 (1%)
Strand = Plus / Plus
Query: 48 tgtccaagaatctctccaaacttctccattgccagtgccttcggtaacgtccacggtgtt 107
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5081 tgtccaaga-tctctccaaacttctccattgccagtgccttcggtaacgtccacggtgtt 5139
Query: 108 tacaagatcgccgctgccctaaaaccagaattgttgggtactttccaagactacgctgct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5140 tacaagatcgccgctgccctaaaaccagaattgttgggtactttccaagactacgctgct 5199
Query: 168 aagcaattaaacaagaaggcagaagacaagccattgtacttggtcttccacggtggttcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5200 aagcaattaaacaagaaggcagaagacaagccattgtacttggtcttccacggtggttcc 5259
Query: 228 ggttcctccaccaaggacttccatactgccatcgatttcggtgtcgtaaaggtcaacttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5260 ggttcctccaccaaggacttccatactgccatcgatttcggtgtcgtaaaggtcaacttg 5319
Query: 288 gatactgactgtcaattcgcttacttgtccggtatcagagactacgtcttgaacaagaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 gatactgactgtcaattcgcttacttgtccggtatcagagactacgtcttgaacaagaag 5379
Query: 348 gactacttgatgaccccagtcggtaacccaaccggtgaagactctccaaacaagaagtac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 gactacttgatgaccccagtcggtaacccaaccggtgaagactctccaaacaagaagtac 5439
Query: 408 tacgacccaagagtctgggttagagaaggtgaaaagaccatgagcaagagaatcactcaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 tacgacccaagagtctgggttagagaaggtgaaaagaccatgagcaagagaatcactcaa 5499
Query: 468 gctttggaaatcttccgtactaaagggtgc-ttggaataaagttcttttgtttagtacca 526
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 5500 gctttggaaatcttccgtact-aagggtgctttggaataaagttcttttgtttagtacca 5558
Query: 527 -tatcccaaaacatttaacttataattttctatatacaattt-aataccagaacgcatga 584
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5559 ttatcccaaacaatttaacttataattttctatatacaatttaaataccagaacgcatga 5618
Query: 585 aatgatcaaatgaagacatcctgaccattagttacaaaatgattgggcagggattccgct 644
|||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 5619 aatgatcaaatgaagacatctgaaccattagttacaaaatgatt-ggcaggga-tccgct 5676
Query: 645 gtgcatcggattcgttcaccaatgttattcttgggacgctaccgaggactttacctgttt 704
||||||||||| ||||||||| |||||| ||| |||||||||||||||| |||||||||
Sbjct: 5677 gtgcatcggatacgttcaccagtgttatcctt-ggacgctaccgaggac-ttacctgtta 5734
Query: 705 tcgaactgcatttgtgctttttct 728
||||||||||||||| ||||||||
Sbjct: 5735 tcgaactgcatttgt-ctttttct 5757
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6837
Number of Sequences: 1807
Number of extensions: 6837
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)