BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC02FM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1347 1183 0.0
>3x_Contig1347
Length = 6130
Score = 1183 bits (597), Expect = 0.0
Identities = 609/612 (99%), Gaps = 2/612 (0%)
Strand = Plus / Minus
Query: 89 ttcaagcgtgaatgcagctccagtcttattagccaataaaacagtagtaaatgttactat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcaagcgtgaatgcagctccagtcttattagccaataaaacagtagtaaatgttactat 556
Query: 149 gttgttgagttgacgatccaaagccgatctacgaacccaaaattgtttgaaaaactctgc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gttgttgagttgacgatccaaagccgatctacgaacccaaaattgtttgaaaaactctgc 496
Query: 209 tgctagctcttttctcagatactgaggtgttacaccttcagtcacggaaagcttttgtat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgctagctcttttctcagatactgaggtgttacaccttcagtcacggaaagcttttgtat 436
Query: 269 aacaaatagaaccgttttcttcatatcttcgttcggtgaattgaattctctctttacaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacaaatagaaccgttttcttcatatcttcgttcggtgaattgaattctctctttacaat 376
Query: 329 cttcatcacttcttcagcgtaatacgacgcatattcgggatccatcaacggaatgagaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttcatcacttcttcagcgtaatacgacgcatattcgggatccatcaacggaatgagaaa 316
Query: 389 tcctagagccttcaaaaatgcagctagttctcttcccctgttttgtttaacacctctcca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcctagagccttcaaaaatgcagctagttctcttcccctgttttgtttaacacctctcca 256
Query: 449 aagtggttcgaggaccggattaaagcgctcaataccatatggctggcagctttgtgccaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagtggttcgaggaccggattaaagcgctcaataccatatggctggcagctttgtgccaa 196
Query: 509 tgatgacactgtttgagcggctatgattctcactggaggatgttcatcttgaaatccctt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgatgacactgtttgagcggctatgattctcactggaggatgttcatcttgaaatccctt 136
Query: 569 ctctatacatgcgataagatcgtcgaggtatggtaagctaccaatccctactaaaatagc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctctatacatgcgataagatcgtcgaggtatggtaagctaccaatccctactaaaatagc 76
Query: 629 aatttgctgaattatctttatcccagtatgtcttgcct--tccagctctttttcgatcta 686
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 75 aatttgctgaattatctttatcccagtatgtcttgccttctctagctctttttcgatcta 16
Query: 687 caaaccaatcgt 698
||||||||||||
Sbjct: 15 caaaccaatcgt 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4912
Number of Sequences: 1807
Number of extensions: 4912
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)