BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC02RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 1172 0.0
>3x_Contig1727
Length = 17872
Score = 1172 bits (591), Expect = 0.0
Identities = 734/769 (95%), Gaps = 10/769 (1%)
Strand = Plus / Plus
Query: 44 acacatctaattcgtccttatgatgaagtgactgatttctgtgttgatgaatcacatcaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5667 acacatctaattcgtccttatgatgaagtgactgatttctgtgttgatgaatcacatcaa 5726
Query: 104 aatgtttggtgcgtcggaaaaaatggtatgctattgaaatactgatttgtcgtccagtct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5727 aatgtttggtgcgtcggaaaaaatggtatgctattgaaatactgatttgtcgtccagtct 5786
Query: 164 aaaagagaagcaatagaattgtaaatagaattatacccatatatagtccaataaattatc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5787 aaaagagaagcaatagaattgtaaatagaattatacccatatatagtccaataaattatc 5846
Query: 224 catacgttgctctcatcaatgtgtatagtaatatctgctttgatattgtatccttctctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5847 catacgttgctctcatcaatgtgtatagtaatatctgctttgatattgtatccttctctt 5906
Query: 284 ttaaacctttcttactgtgcatctgaaggcaccaaaaatcatcttgaaatcttaacatca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907 ttaaacctttcttactgtgcatctgaaggcaccaaaaatcatcttgaaatcttaacatca 5966
Query: 344 aaatgaagaagttaaccttctacctctaaatatgatgatcatgaaacacccaagtaagcc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5967 aaatgaagaagttaaccttctacctctaaatatgatgatcatgaaacacccaagtaagcc 6026
Query: 404 accaaatcacctttgaaggacgatatagcactataatttcctacacgatgagtagaagga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6027 accaaatcacctttgaaggacgatatagcactataatttcctacacgatgagtagaagga 6086
Query: 464 tatctggtgctaatgaccctttgctagacatgttnttcgatgatgattttgtacctcaag 523
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6087 tatctggtgctaatgaccctttgctagacatgtttttcgatgatgattttgtacctcaag 6146
Query: 524 cattcgtcgacatattgttatcatcttttcagacaggcc-attagaag-attgaagaccc 581
|||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||
Sbjct: 6147 cattcgtcgacatattgttatcatctttccagacaagccaattagaagaattgaagacca 6206
Query: 582 attgctctagtctactttc-anaatggactattacagtgggcatattac-aaagaaactg 639
||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||
Sbjct: 6207 attgctctagtctactttcaaaaatggactattacagtgggcatattacaaaagaacttg 6266
Query: 640 agtccactattcagg-gcttcagaagcctgctgaacttatttttttc-ccgccaatgagg 697
||||||||||||||| ||||||||||||||||||||||||| | | | | || |||||||
Sbjct: 6267 agtccactattcaggtgcttcagaagcctgctgaacttattatatacgcagcaaatgagg 6326
Query: 698 aacaccagggaacaacaaacctag-gttttatttgggatactttagcgaattgtgggaaa 756
|||| || ||||||||||| |||| || |||||| ||||||| |||||||| ||| | ||
Sbjct: 6327 aacagcaaggaacaacaaaactagagtattattt-ggatactctagcgaatagtgtg-aa 6384
Query: 757 cttattatagaacagaccttaaagcttttgttaaacaatttgaaaagct 805
||||||| || |||||| |||||||| ||| ||||||||| ||| ||||
Sbjct: 6385 cttattagag-acagacgttaaagctattgataaacaattagaagagct 6432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7109
Number of Sequences: 1807
Number of extensions: 7109
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)