BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC03FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1398 0.0
>3x_Contig1589
Length = 10239
Score = 1398 bits (705), Expect = 0.0
Identities = 740/749 (98%), Gaps = 2/749 (0%)
Strand = Plus / Minus
Query: 85 cgagagtttcgcttagttcgatttctttttcgtcatttgaatcatagagccacaattgtg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 cgagagtttcgcttagttcgatttctttttcgtcatttgaatcatagagccacaattgtg 3505
Query: 145 ggatattgtcacgtgattttgcttcatcaaatcacctgaacaggcggaagtggctcatgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ggatattgtcacgtgattttgcttcatcaaatcacctgaacaggcggaagtggctcatgc 3445
Query: 205 atgtggtggaatagtggtcttcctgaacgtttccatttggtatagtagggtcttagcacg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 atgtggtggaatagtggtcttcctgaacgtttccatttggtatagtagggtcttagcacg 3385
Query: 265 ttcctttacgtctaaatcgccgttccaatccaagattttctttactgcgtcattgaaacc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 ttcctttacgtctaaatcgccgttccaatccaagattttctttactgcgtcattgaaacc 3325
Query: 325 tagcttatcgagctttttgaaccttatgattgctggacttaaagccgaaatgtttccagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 tagcttatcgagctttttgaaccttatgattgctggacttaaagccgaaatgtttccagt 3265
Query: 385 ggtagttgctgggcggatgaaatctttatgaggatcagttgagtcctcttcttcgtcatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 ggtagttgctgggcggatgaaatctttatgaggatcagttgagtcctcttcttcgtcatt 3205
Query: 445 actttgctcctcttcgtcgaaatcaccttctcgctcttcttgttctgggacttcttcttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 actttgctcctcttcgtcgaaatcaccttctcgctcttcttgttctgggacttcttcttc 3145
Query: 505 ttctgaagacatgtttgatgctcgtgcatttaatggcattctaacgagaggatcatcgtt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ttctgaagacatgtttgatgctcgtgcatttaatggcattctaacgagaggatcatcgtt 3085
Query: 565 tctgtcttcgagagctgagctgctaccttcttgaagggcccagtccgtgtcgaagtgcgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 tctgtcttcgagagctgagctgctaccttcttgaagggcccagtccgtgtcgaagtgcgg 3025
Query: 625 gtttccgttttctggtagagaattattgtaagggacgtgctggatgggatgagtcccata 684
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3024 gtttccgttttctggtagagaattattgtaagggacgtgctggat-ggaggagtcccata 2966
Query: 685 ttagattcgtgattatccaaagacacgctttagtaatttcatctcccttggccatttaga 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2965 ttagattcgtgattatccaaagacacgctttagtaatttcatctcccttggccattaaga 2906
Query: 745 tatatttcttcacgatatctagtagttcatcctgggaaataaacaggtttctcttggttt 804
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 2905 tatattctttcacgatatctagtagttcatcctgggaaataaccaggtttctcttgtttt 2846
Query: 805 catttatagcgggggaaattgaccactat 833
|||||||||| || |||||||||||||||
Sbjct: 2845 catttatagc-ggtgaaattgaccactat 2818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7409
Number of Sequences: 1807
Number of extensions: 7409
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)