BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC03RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig707 383 e-106
3x_Contig1704 379 e-105
>3x_Contig707
Length = 1885
Score = 383 bits (193), Expect = e-106
Identities = 298/324 (91%), Gaps = 7/324 (2%)
Strand = Plus / Minus
Query: 495 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcatatagagctgccagat 554
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1885 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 1826
Query: 555 tctatcttcggatcggatat-ataatgactttgacaccaatcaaaacattcatggatatt 613
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 1825 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 1766
Query: 614 agatttactatagactctgattact-caacacagattacctggggttaatctcttcagcc 672
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct: 1765 agatttactatagactctga-tactccaacacagattacctggggtaaatctcttcagcc 1707
Query: 673 acgttatcaaagcgtaatgttgtgggttggatttcctaacggagccctcaattggattca 732
| ||||||||||||||||||||| |||| |||||||||||| || |||| | ||||| ||
Sbjct: 1706 aggttatcaaagcgtaatgttgt-ggtttgatttcctaacgaag-cctccaatggatcca 1649
Query: 733 tttccnaaagtagggtttcgggaataaaattcagccttttatttcatggaaaactcgaat 792
| ||| ||||||||| ||| || |||||| |||| |||||||||||||| |||||||| |
Sbjct: 1648 tctcccaaagtaggg-ttctgggataaaa-tcaggcttttatttcatggtaaactcgagt 1591
Query: 793 ttcaatggcttaataatatttcaa 816
| |||||||||| ||||| |||||
Sbjct: 1590 tccaatggcttagtaatagttcaa 1567
>3x_Contig1704
Length = 14855
Score = 379 bits (191), Expect = e-105
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 50 cggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaacttc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaacttc 143
Query: 110 ttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcagt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcagt 83
Query: 170 caataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaattc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 caataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaattc 23
Query: 230 actcaaaattt 240
|||||||||||
Sbjct: 22 actcaaaattt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7439
Number of Sequences: 1807
Number of extensions: 7439
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)