BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC06FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1162 0.0
>3x_Contig1768
Length = 25668
Score = 1162 bits (586), Expect = 0.0
Identities = 689/718 (95%), Gaps = 5/718 (0%)
Strand = Plus / Minus
Query: 86 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24677 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 24618
Query: 146 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24617 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 24558
Query: 206 tcatcatcagatttattatcacttcccccaaaagcaggacgttttctcgaacactgtccc 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24557 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 24498
Query: 266 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24497 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 24438
Query: 326 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24437 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 24378
Query: 386 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24377 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 24318
Query: 446 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24317 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 24258
Query: 506 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24257 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 24198
Query: 566 atggttntaaggttttgntnattcaatattataggtattttgatattgaa-gaaatcctt 624
|||||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct: 24197 atggttttaaggttttgttaattcaatattataggtattttgatattgaaggaaatcctt 24138
Query: 625 ttcaaatgggtatttttaactactaaatgaggatgggaaacccgctacctanttcattgc 684
| |||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct: 24137 tccaaatgggtattttaaactactaaatgaagatgggaaacacgctacctagttcattgc 24078
Query: 685 tttcagttcatatgacaatggccaatattcttggttataacgcctaaagtggacggatct 744
|||||||||||||||||| | | |||||||| |||||| | ||||||| ||| |||||
Sbjct: 24077 attcagttcatatgacaattgtctatattctttgttatagtgtctaaagttgactgatct 24018
Query: 745 tct-aagcctc-attaattatttcctcattttagcctt-aataacaacttccaaagtg 799
||| |||| || ||| |||||||| ||| ||||| ||| |||||||||||||||||||
Sbjct: 24017 tctaaagcatctattcattatttcttca-tttagtcttaaataacaacttccaaagtg 23961
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9775
Number of Sequences: 1807
Number of extensions: 9775
Number of successful extensions: 276
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)