BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC37ZC06RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig904 1471 0.0
>3x_Contig904
Length = 3319
Score = 1471 bits (742), Expect = 0.0
Identities = 843/870 (96%), Gaps = 5/870 (0%)
Strand = Plus / Minus
Query: 40 gcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaattat 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaattat 856
Query: 100 gctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaaggg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaaggg 796
Query: 160 ttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacagtt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacagtt 736
Query: 220 tgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggaggca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggaggca 676
Query: 280 ccgaattcgtggcttatggtgctactgaaccgtgagatagttggtgatttcaagacctca 339
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccgaattcgtggcttagggtgctactgaaccgtgagatagttggtgatttcaagacctca 616
Query: 340 cgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttgcc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttgcc 556
Query: 400 caagagttgtgctggctcgaagatttggaaaacctcagcggcaaacaatttaagccggaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caagagttgtgctggctcgaagatttggaaaacctcagcggcaaacaatttaagccggaa 496
Query: 460 tcgaaaacgaaaacaaaggttcatataaataaacctgaacctgaacaacaggagaagatc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcgaaaacgaaaacaaaggttcatataaataaacctgaacctgaacaacaggagaagatc 436
Query: 520 aacacgaaagatgaagaggtattgaaagaggtcacggaggaaatagcacttgagctaaat 579
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacacgaaagaggaagaggtattgaaagaggtcacggaggaaatagcacttgagctaaat 376
Query: 580 aatctaaccattaaagaatgaacaacacagcgacaacatctggtaatgttacatctttcg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatctaaccattaaagaatgaacaacacagcgacaacatctggtaatgttacatctttcg 316
Query: 640 catagtgggcttttgaatcgtcttcggtcgaaggcacttcttccgtcggaaccactacat 699
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaagtgggcttttgaatcgtcttcggtcgaaggcacttcttccgtcggaaccactacat 256
Query: 700 cggattatcaatctcaaaataattcaagggttagcaggcactcaacatctaagaaacggt 759
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cggataatcaatctcaaaataattcaagggttagcaggcactcaacatctaagaaacgta 196
Query: 760 aagtcgataggcagccaactttttttgga-tattcaatcatcagcaggaaagggatttgt 818
|||||||||||||||||||| |||||| | ||| |||||||||||||||||||||| |
Sbjct: 195 aagtcgataggcagccaactatttttgaattatcaaatcatcagcaggaaagggattgtt 136
Query: 819 ctttccaattcag-aaatc-atgcaaactaagccatccaaatctgattcaa-gtatacgt 875
|||| | | |||| ||||| |||||||||| || |||||||||||| |||| ||||||||
Sbjct: 135 ctttgccaatcagaaaatcaatgcaaactaggcaatccaaatctgagtcaaggtatacgt 76
Query: 876 taag-aattaaaagattacttcacctacct 904
||| ||| ||||||||||| || ||||||
Sbjct: 75 caagaaataaaaagattactacaactacct 46
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6747
Number of Sequences: 1807
Number of extensions: 6747
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)