BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZC07FM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1548                                                        1021   0.0  

>3x_Contig1548 
          Length = 9830

 Score = 1021 bits (515), Expect = 0.0
 Identities = 610/634 (96%), Gaps = 6/634 (0%)
 Strand = Plus / Plus

                                                                       
Query: 86  agaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttcgaatgagg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttcgaatgagg 251

                                                                       
Query: 146 gctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttggcattattc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttggcattattc 311

                                                                       
Query: 206 tggttatgtaaactgaaactcttttcaatatgaaaatggcgtaataaaaatattcataac 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tggttatgtaaactgaaactcttttcaatatgaaaatggcgtaataaaaatattcataac 371

                                                                       
Query: 266 aggtacttgtcatatcgaacaagattgagttttgttcgatgcaacgaagagagtaaggat 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggtacttgtcatatcgaacaagattgagttttgttcgatgcaacgaagagagtaaggat 431

                                                                       
Query: 326 ctaatggtgtcgaatcatatgccagagagattgttcatagtggatcatgtcagtagaaat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctaatggtgtcgaatcatatgccagagagattgttcatagtggatcatgtcagtagaaat 491

                                                                       
Query: 386 tgattgggataatatccgtggggatttaagcgttaatcaaggtgtgaaggactttttaaa 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgattgggataatatccgtggggatttaagcgttaatcaaggtgtgaaggactttttaaa 551

                                                                       
Query: 446 ctctcggctacaagagtttgaactgcccagttacgtgaataatctttaggtaactaattt 505
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 ctctcggctacaagagtttgaactgcccagttacgtgaataatcttaaggtaactaattt 611

                                                                       
Query: 506 cgatttaagtactatgccnttcaatgttatatt-aaacagatggatgatcctttagatga 564
           ||||||| ||||||||||    ||||||||||| ||||||||||||||||||||||||||
Sbjct: 612 cgatttaggtactatgcctccaaatgttatattaaaacagatggatgatcctttagatga 671

                                                                       
Query: 565 gttttattcttatctgttacaagagggagatatttcaaaag-agctgcgaaagattagaa 623
           |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||
Sbjct: 672 gttttattcttatctgttacaagaaggagatatttcaaaagaagctgcgaaggataagaa 731

                                                                       
Query: 624 cactgatgtgcaactatttagtgggacttggattttaaaggggatttgagcattgaaatg 683
           |||||||||||||||| ||||||| |||| |||| |||||| ||| ||||||||||| ||
Sbjct: 732 cactgatgtgcaacta-ttagtggaactt-gattataaaggtgatatgagcattgaattg 789

                                             
Query: 684 gcaacctgaccttggttcttaataacccgagccc 717
            | | |||| ||| ||||||||| ||||||||||
Sbjct: 790 tc-agctgatctt-gttcttaattacccgagccc 821


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6511
Number of Sequences: 1807
Number of extensions: 6511
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)