BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC37ZC07RM1.SCF screened BAC_end (953 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1056 1037 0.0 >3x_Contig1056 Length = 3113 Score = 1037 bits (523), Expect = 0.0 Identities = 616/639 (96%), Gaps = 6/639 (0%) Strand = Plus / Minus Query: 54 attccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaacggga 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 attccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaacggga 1225 Query: 114 aagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggacagaatc 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1224 aagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggacagaatc 1165 Query: 174 aggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttgtatgg 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1164 aggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttgtatgg 1105 Query: 234 aacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatgcgcac 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1104 aacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatgcgcac 1045 Query: 294 aatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcggaccga 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1044 aatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcggaccga 985 Query: 354 aaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatgacaaag 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 984 aaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatgacaaag 925 Query: 414 aagcaatcagttatcaactatttgatcaagttaataacctcaactattctattgatgatt 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 924 aagcaatcagttatcaactatttgatcaagttaataacctcaactattctattgatgatt 865 Query: 474 tgaagctagaatatgacaagatggtagctgaacaaaaggctaagttaaaaaatgggtacc 533 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct: 864 tgaggctagaatatgacaagatggtagctgaacaaaaggctaggttaaaaaatggttaca 805 Query: 534 cattagattattaaaagcctttaagaattctaagaagtttgaaatgtgtcttgacattat 593 || ||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| Sbjct: 804 caatagatta-taaaagccttaaagaa-tctaagaaggttgaaatgtgtcttgacattat 747 Query: 594 caagaaagtc-cagaattctacacctgatgaaaagctagtcatttttttccaaattactt 652 |||||||||| ||| |||||| ||||||||||||||||||| |||| ||| | || | Sbjct: 746 caagaaagtcacag-attctaacactgatgaaaagctagtcatattttcgcaattcac-t 689 Query: 653 atgttcttttgaatttttagaacattttatcaagaagaa 691 |||||| |||||| |||||| |||||||||||||||||| Sbjct: 688 atgttc-tttgaaattttaggacattttatcaagaagaa 651 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9529 Number of Sequences: 1807 Number of extensions: 9529 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 1 length of query: 953 length of database: 10,358,551 effective HSP length: 16 effective length of query: 937 effective length of database: 10,329,639 effective search space: 9678871743 effective search space used: 9678871743 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)