BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC37ZC07RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1056                                                        1037   0.0  

>3x_Contig1056 
          Length = 3113

 Score = 1037 bits (523), Expect = 0.0
 Identities = 616/639 (96%), Gaps = 6/639 (0%)
 Strand = Plus / Minus

                                                                        
Query: 54   attccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaacggga 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 attccgaacttgtgaaaatcggggagtcaaatgctaaaagctcaaagattattaacggga 1225

                                                                        
Query: 114  aagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggacagaatc 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 aagatttcgagaaagattggaggccgctttattttgtatctaaaaggatgggacagaatc 1165

                                                                        
Query: 174  aggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttgtatgg 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 aggccaccttgaacgccgtcaacgcatgtttagatgacatgacttgcccagtttgtatgg 1105

                                                                        
Query: 234  aacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatgcgcac 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aacaaatggatattgactcaatgttagttttgaattcctgtggtcattgcttatgcgcac 1045

                                                                        
Query: 294  aatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcggaccga 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 aatgttttgaaccgtatgttgataacgcaaaattggagcccaccgcgtccttcggaccga 985

                                                                        
Query: 354  aaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatgacaaag 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  aaggtactaattctgtcaatattccatgtcttgtatgcaggaaaatgaacaatgacaaag 925

                                                                        
Query: 414  aagcaatcagttatcaactatttgatcaagttaataacctcaactattctattgatgatt 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  aagcaatcagttatcaactatttgatcaagttaataacctcaactattctattgatgatt 865

                                                                        
Query: 474  tgaagctagaatatgacaagatggtagctgaacaaaaggctaagttaaaaaatgggtacc 533
            ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| 
Sbjct: 864  tgaggctagaatatgacaagatggtagctgaacaaaaggctaggttaaaaaatggttaca 805

                                                                        
Query: 534  cattagattattaaaagcctttaagaattctaagaagtttgaaatgtgtcttgacattat 593
            || ||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct: 804  caatagatta-taaaagccttaaagaa-tctaagaaggttgaaatgtgtcttgacattat 747

                                                                        
Query: 594  caagaaagtc-cagaattctacacctgatgaaaagctagtcatttttttccaaattactt 652
            |||||||||| ||| ||||||   ||||||||||||||||||| ||||  ||| | || |
Sbjct: 746  caagaaagtcacag-attctaacactgatgaaaagctagtcatattttcgcaattcac-t 689

                                                   
Query: 653  atgttcttttgaatttttagaacattttatcaagaagaa 691
            |||||| |||||| |||||| ||||||||||||||||||
Sbjct: 688  atgttc-tttgaaattttaggacattttatcaagaagaa 651


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9529
Number of Sequences: 1807
Number of extensions: 9529
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)